PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00915.1.g00250.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 152aa    MW: 15978.2 Da    PI: 8.0396
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00915.1.g00250.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26073.93.1e-2325119192
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer...edamsslvyeAearardPvyGavg 78 
                                   +CaaCk +rrkC++dCvlapyfpa++p++fa+v+++FGasnv +ll++  +  +    ++ + ++ +A a   +P  Ga +
  Zpz_sc00915.1.g00250.1.am.mk  25 RCAACKNQRRKCSPDCVLAPYFPASDPRRFACVQRVFGASNVARLLQEEIRAAQselARTQAQIAVHAAAAGAQPAVGARQ 105
                                   6**********************************************98555551115555679***************** PP

                        DUF260  79 vilklqqqleqlka 92 
                                   ++++  q   q +a
  Zpz_sc00915.1.g00250.1.am.mk 106 LMNAQVQAPPQQQA 119
                                   99987777666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.72724130IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-2225113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSTSGASTEE ASAASAANPG TGSRRCAACK NQRRKCSPDC VLAPYFPASD PRRFACVQRV  60
FGASNVARLL QEEIRAAQSE LARTQAQIAV HAAAAGAQPA VGARQLMNAQ VQAPPQQQAG  120
DALMMVQQEP CQGLDTLFLD DVRAGVTCLM MI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-171472158LOB family transfactor Ramosa2.1
5ly0_B3e-171472158LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00915.1.g00250.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806770.11e-37LOB domain-containing protein 24-like
TrEMBLA0A3L6TJP84e-39A0A3L6TJP8_PANMI; Uncharacterized protein
STRINGSb01g005700.11e-32(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1972078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.12e-19LOB domain-containing protein 23