PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00912.1.g00220.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 430aa MW: 46093.9 Da PI: 8.8655 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 182.4 | 3.7e-57 | 182 | 277 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedy+ep Zpz_sc00912.1.g00220.1.am.mk 182 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIEP 262 89******************************************************************************* PP NF-YB 83 lkvylkkyrelegek 97 lk+yl+k+relegek Zpz_sc00912.1.g00220.1.am.mk 263 LKLYLHKFRELEGEK 277 ************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-53 | 179 | 288 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.07E-39 | 184 | 281 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-27 | 187 | 251 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 6.5E-20 | 215 | 233 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 218 | 234 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 6.5E-20 | 234 | 252 | No hit | No description |
PRINTS | PR00615 | 6.5E-20 | 253 | 271 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MAKGACVQWS QRESTSNSPS PTSRSYVVAS LDHPRGSRVP WPTQTADTPP AWQKRTASAS 60 AGWPQTYRQT NGPPLATSPA RCVLIPTIHP TEGRCQSLHS PLKPLSALVA LLPPPFQIFA 120 RPRRPSCSGE FQPSCLAPLI RRAARKERGE QGEPALFLGP AAMPDSDNES GGPSNAEFSS 180 PREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS EFISFITGEA SDKCQREKRK 240 TINGDDLLWA MTTLGFEDYI EPLKLYLHKF RELEGEKVAT GASGSGQQQK DAPSSAHNNA 300 AVYGVYGGAG AGGSGSGMVM MMGQPMYGSP PAGYPQPPHH QMVMGGAKGA YGHGDASPSG 360 LGRQDRPLRG NESEPAGFGW PGKDLHGQVT GHCSVRDACF CLDWRHRSEA VSISPMKERG 420 HGMHCAARGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-47 | 182 | 272 | 7 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00912.1.g00220.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956383 | 1e-173 | EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 5e-70 | nuclear factor Y, subunit B3 |