PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00841.1.g00130.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 301aa MW: 32155.9 Da PI: 7.1774 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.5 | 2.8e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +C++C+vlr++C ++C ++p++ pa+q++++ +++k++G++ +l+l++a+p++ r+++++sl+yeA+ r+ +P+yG+ Zpz_sc00841.1.g00130.1.sm.mk 4 SCNGCRVLRKGCGDSCSIRPCLqwiksPAAQSNATVFLAKFYGRAGLLNLVNAAPQHLRPAVFRSLLYEACGRIVNPIYGS 84 6******************************************************************************** PP DUF260 77 vgvilklqqqleqlkaelallke 99 vg++++++++++q+++e++l ++ Zpz_sc00841.1.g00130.1.sm.mk 85 VGLLWSGNWNMCQAAVEAVLKGA 107 *****************998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.379 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MRLSCNGCRV LRKGCGDSCS IRPCLQWIKS PAAQSNATVF LAKFYGRAGL LNLVNAAPQH 60 LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GNWNMCQAAV EAVLKGAPIV KISSDEAAAD 120 TPSPAHLHKA AYDIRHVAAS SSSDKPGRLK KRTSASSAAT AAATTTTARS NKKSKKAAPD 180 DDHQQQQVST ASDHHHLHVV EPMDSDDAEA AGSHVSQAEQ STHSEREAEQ SIHNERESEQ 240 STHDEQQIEE KPQGQLGLDL TLGFVPIPAP CVPRPAPDAG DAGCSITGTG WTAHEPAFRF 300 L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00841.1.g00130.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012568012.1 | 2e-86 | LOB domain-containing protein 41 | ||||
TrEMBL | F2DDE6 | 7e-89 | F2DDE6_HORVV; Predicted protein | ||||
STRING | MLOC_58304.1 | 1e-89 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-73 | LOB domain-containing protein 41 |