PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00735.1.g00230.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 529aa    MW: 57919.6 Da    PI: 7.7394
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00735.1.g00230.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.51.7e-1610491756
                                    HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                    +lF+++++p++++r eL+k+lgL+ rqVk+WFqNrR+++k
  Zpz_sc00735.1.g00230.1.sm.mkhc 10 RLFKECPHPDEKQRGELSKRLGLDPRQVKFWFQNRRTQMK 49
                                    79***********************************999 PP
2START1341.7e-4215327194206
                                     EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE.....-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                           START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd.....seqkppe...sssvvRaellpSgiliepksnghsk 163
                                     m+aelq+lsplvp R+++f+R+++ql +g w++vdvSvd     +++       +++ v++++lpSg+++++++ng++k
  Zpz_sc00735.1.g00230.1.sm.mkhc 153 MKAELQVLSPLVPiREVTFLRFSKQLAEGAWAVVDVSVDgllrdQNS---AttsTAGNVKCRRLPSGCVMQDTPNGYCK 228
                                     99************************************844221233...24569************************ PP

                                     EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                           START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                     vtwveh++++++++h+l+r+l++sgla+ga++w+atlqrqce+
  Zpz_sc00735.1.g00230.1.sm.mkhc 229 VTWVEHTEYDEASVHQLYRPLLRSGLAFGARRWLATLQRQCEC 271
                                     *****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.7E-9555IPR001356Homeobox domain
PROSITE profilePS5007114.398951IPR001356Homeobox domain
CDDcd000868.26E-14951No hitNo description
Gene3DG3DSA:1.10.10.604.8E-151058IPR009057Homeodomain-like
SuperFamilySSF466891.71E-131055IPR009057Homeodomain-like
PfamPF000466.5E-141049IPR001356Homeobox domain
PROSITE patternPS0002702649IPR017970Homeobox, conserved site
SMARTSM002342.3E-1445271IPR002913START domain
SuperFamilySSF559612.89E-20151271No hitNo description
PfamPF018524.9E-37153271IPR002913START domain
PROSITE profilePS5084827.225159274IPR002913START domain
SuperFamilySSF559611.24E-21291512No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MDSCPCCGRR LFKECPHPDE KQRGELSKRL GLDPRQVKFW FQNRRTQMKT QLERHENALL  60
KQENDKLRAE NMTIREAMRS PMCGGCGSPA MLGEVSLEEQ HLRIENARLK DELNRVYSLA  120
TKFLGKPLSF MSGYQIQPHL ALPMPSSSLE LAMKAELQVL SPLVPIREVT FLRFSKQLAE  180
GAWAVVDVSV DGLLRDQNSA TTSTAGNVKC RRLPSGCVMQ DTPNGYCKVT WVEHTEYDEA  240
SVHQLYRPLL RSGLAFGARR WLATLQRQCE CLAILMSPDT VSANDASVIT QEGKRSMLKL  300
ARRMTENFCA GVSASSAREW SKLDGAAGSI GEDVRVMARK SVNEPGEPPG VVLSAATSVW  360
VPVAPEKLFN FLRNEQLRAE WDILSNGGPM QEMANIAKGQ GPGNSVSLLR ASAMSANQSS  420
MLILQETCTD ASGSMVVYAP VDIPAMQLVM NGGDSTYVAL LPSGFAILPD APGIDSAEHK  480
TGGSLLTVAF QILVNSQPTA KLTVESVETV NNLISCTIKK IKNALQCDT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00735.1.g00230.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632490.0BT063249.1 Zea mays full-length cDNA clone ZM_BFc0042P14 mRNA, complete cds.
GenBankBT0644530.0BT064453.1 Zea mays full-length cDNA clone ZM_BFc0170E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457484.10.0homeobox-leucine zipper protein ROC5
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A3L6SNG90.0A0A3L6SNG9_PANMI; Homeobox-leucine zipper protein ROC5-like isoform X2
STRINGOMERI02G26100.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]