PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00628.1.g00230.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 713aa    MW: 77185.7 Da    PI: 9.0064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00628.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.99.1e-15640665126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +ktelC+ + +tG C+yGdrC+FaHg
  Zpz_sc00628.1.g00230.1.am.mk 640 FKTELCNKWEETGACSYGDRCQFAHG 665
                                   79***********************8 PP
2zf-CCCH19.41.9e-06678703126
                                   --S---SGGGGTS.--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                                   ykte Cr  ++ G +C+yG rC+F H+
  Zpz_sc00628.1.g00230.1.am.mk 678 YKTEVCRMVHA-GvICPYGHRCHFRHS 703
                                   9**********.66**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-18634672IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-10636671IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488639667IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-9639666IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-12640665IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-11673703IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7674704IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.596677705IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013677704IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MLSLDSGDTN VHEKFSDQRL VSDTYSHTVV DMGGLDRYQA GRAGLDVHRI LRFSYLYSVC  60
FVSLLRSRSP SLALLIHSRE RSKRPRAPQL SSSSLKPLQN PARLLLRLRL PPPCAPPPPP  120
PAEMPPPPPT NSALNPPHLL SSIATPRSRA PSLNLGHPSD KWPRRLSSTA PLAAVSSAAF  180
ASSADPSASL RALCSHGQLS EALWLLESSA EPPDEDAYVA LFRLCEWRRA VDAGLCACAH  240
ADENHSCVTV ASGMLSDIGF AKEVHGLAVK KGGLPDKALE VYALMEVNNA RILPRAARRS  300
AADALGFGLN NTSTSYSTES ALIRLRPMNT CPPASPHHSS SVPLHLPPLR SPVSSVVPLL  360
QSTPNYEVSK LFAERQGSRA MMEALLPGTA QHDGLHSAFG PRPFVPGGGR FPSSPNLLTY  420
GGDLFCGGYS TDPFGRGPER SASTSPRAAS RSRFSPDTGS VVDEEDDSPA AAEHRARLAR  480
LALQYQEAAS RYQLCLSHLA DTNDEAAALR RENDQLRCAN NDLVRRIDIV GGKHSSALAL  540
ADEFRRLTLA EEQAKTIPPP PPPAAAMRPV PVVTPKSISV RSTGYVKMTP SGKHRASKTK  600
NAGSQRVFVG MDGAAKGEEK GVKEQCTGGV EFEVYNQGMF KTELCNKWEE TGACSYGDRC  660
QFAHGIAELR PVIRHPRYKT EVCRMVHAGV ICPYGHRCHF RHSITPADRI LRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-23640703467Butyrate response factor 2
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00628.1.g00230.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985717e-80AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence.
GenBankAC0988327e-80AC098832.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1268_B08, complete sequence.
GenBankAK1063547e-80AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence.
GenBankAP0149617e-80AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126137e-80CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-51C3H family protein