PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00628.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 487aa    MW: 52967 Da    PI: 10.5299
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00628.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB155.96.7e-49305402294
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfe 77 
                                   +eqdrflPian+srim++++P+n+ki+kdake+vqecvsefisf+tse     asdkc +ekrktingddl+w+++tlGfe
  Zpz_sc00628.1.g00110.1.am.mk 305 KEQDRFLPIANISRIMRRAVPENGKIAKDAKESVQECVSEFISFITSEsvaylASDKCMKEKRKTINGDDLIWSMGTLGFE 385
                                   89*********************************************9887778*************************** PP

                         NF-YB  78 dyveplkvylkkyrele 94 
                                   +yveplk+ylk yre++
  Zpz_sc00628.1.g00110.1.am.mk 386 EYVEPLKLYLKIYREFQ 402
                                   ***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.2E-45299405IPR009072Histone-fold
SuperFamilySSF471132.19E-32307404IPR009072Histone-fold
PfamPF008086.8E-22310379IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.3E-15338356No hitNo description
PRINTSPR006154.3E-15362380No hitNo description
PRINTSPR006154.3E-15381399No hitNo description
PfamPF056787.3E-10420446IPR008889VQ
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSNHNCAEQT TEQRLLLVSQ ITAGAQDYAN TLQGGIYLFT LDLQRAIEPK TIGGADELSE  60
LITTGEFWLR STSAPATTKK TASSRRRRSV PPRHRITASE NLARARGRRP AVQAQPLGSA  120
PAVGVSEIWR ARDFWNGGSG PLRRAAGAEA EPAQGKNRGG RPEDGLVASK ERARVVPNAC  180
RPQSAPRQVK EKKNARKRGQ PARGMARLLA RDGMLRSDDV GWDCSRSLQI RRPVASSPRA  240
LPPQSTALIP SAISVSVPVS KKSRHRHRSP LSPLARPYNG GGCCFPVPGF AMSEGEFTQE  300
GAGAKEQDRF LPIANISRIM RRAVPENGKI AKDAKESVQE CVSEFISFIT SESVAYLASD  360
KCMKEKRKTI NGDDLIWSMG TLGFEEYVEP LKLYLKIYRE FQPRPAMSRD DEAKPLTVKI  420
IETVFVEADT ADEFKSVVQR LTGKDAVAPP EETTGRSPRA APRIGAGKDG GSRGDREGGA  480
SGTKQNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-39305400494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-39305400494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00628.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.37e-49nuclear factor Y, subunit B1