PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00627.1.g00150.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 513aa MW: 57791.1 Da PI: 11.2066

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00627.1.g00150.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.1	5.6e-17	48	93	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellP++ +K +K+++L +A++Y+ksLq Zpz_sc00627.1.g00150.1.am.mk 48 HNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 93 9***********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.8E-19	41	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.96E-16	41	97	No hit	No description
PROSITE profile	PS50888	18.482	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-20	46	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-14	48	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-18	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MDLEGEGTLV EVRRRDEEQG EVHQELMEEV RAPRTTPPTR RSRSVEFHNF SERRRRDRIN 60 EKLKALQELL PNCTKTDKVS MLDEAIDYLK SLQLQLQMLV MGKGMAPVVP PELQQYMHYM 120 TADPAQMPPP PLRPSQQPRP FQITQADPQR QSNVESDFLS QMQNLNPSEP PQNFLRPPKL 180 QLYTPPWADS PCRHQRASEC ALRRAVVGLF GPRSVSPSSF VSCLLVPDRA FPCSCSHLSS 240 LSRPTRRLRP PLKLLSAKAQ LLEVDAVEQS LCPAAPHRRV GPGGAPLTSG PRLHPHPHXX 300 XXRTSRWRRF VAVVRGGGSS RWPARGGGGS SRWSASRVPR KVTGAGNDVS PDDGWIRRDA 360 LLERQQRLEL HGHGRVVRYR FRLRRQEQCH RRPVVESSVD SKLWREGYGA AAEARDADGP 420 PNVQVHRYVR WAGCLAPASS PRAARTYLSA SCHLCRARAP FRRPPLLARA GRFRRRKQAT 480 SRCSDTARPV PCLAIVGAAK PGHEYPSVSV SLW

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MDLEGEGTLV EVRRRDEEQG EVHQELMEEV RAPRTTPPTR RSRSVEFHNF SERRRRDRIN  60
EKLKALQELL PNCTKTDKVS MLDEAIDYLK SLQLQLQMLV MGKGMAPVVP PELQQYMHYM  120
TADPAQMPPP PLRPSQQPRP FQITQADPQR QSNVESDFLS QMQNLNPSEP PQNFLRPPKL  180
QLYTPPWADS PCRHQRASEC ALRRAVVGLF GPRSVSPSSF VSCLLVPDRA FPCSCSHLSS  240
LSRPTRRLRP PLKLLSAKAQ LLEVDAVEQS LCPAAPHRRV GPGGAPLTSG PRLHPHPHXX  300
XXRTSRWRRF VAVVRGGGSS RWPARGGGGS SRWSASRVPR KVTGAGNDVS PDDGWIRRDA  360
LLERQQRLEL HGHGRVVRYR FRLRRQEQCH RRPVVESSVD SKLWREGYGA AAEARDADGP  420
PNVQVHRYVR WAGCLAPASS PRAARTYLSA SCHLCRARAP FRRPPLLARA GRFRRRKQAT  480
SRCSDTARPV PCLAIVGAAK PGHEYPSVSV SLW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	56	ERRRRD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00627.1.g00150.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9562	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	3e-28	phytochrome interacting factor 3-like 5