PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00621.1.g00180.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 558aa    MW: 61213.8 Da    PI: 10.0055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00621.1.g00180.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.41.1e-17336385255
                                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Zpz_sc00621.1.g00180.1.sm.mkhc 336 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 385
                                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.665132162IPR002885Pentatricopeptide repeat
PfamPF015350.078137163IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.326163197IPR002885Pentatricopeptide repeat
PfamPF015359.5E-4165193IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.5E-4165198IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.097198232IPR002885Pentatricopeptide repeat
PfamPF130413.4E-9266314IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.665266302IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.8E-6269294IPR002885Pentatricopeptide repeat
Gene3DG3DSA:4.10.280.109.4E-24331405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-19332402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.78334384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-15336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.55E-16336389No hitNo description
SMARTSM003532.6E-13340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MAPGAGSQWQ PAHVHQLHAH FLVSGLLAGS SAVAVTLLRA ACRVSPSPCL HPLARHLLDG  60
TRRPSPHLLH AAARLANRLR LPSLALRHYL ALREHHPSFL PPAPAIVDVL KSFPGRAAHA  120
HALRVASHEL DARFVDNTLI AMYFACGDAR SAKQVFEGMR NSDVISWTSL ISGLVQNGCP  180
LQALQHFTAM MRHEVRPDFV LIVSVLKAYM ELDDFPCATA VHSLVVKGGF HTELDVVITL  240
TAMYARFGHI VAARALFDTV PSQRVNVILW NAMISGYSKN GLANEAVHLF KRMRMVTRSM  300
TPDSVTLLSV IQALRVDRKG GSCSDGGMDQ RPNTPRSKHS ATEQRRRSKI NDRFQILREL  360
LPHSDQKRDK ATFLLEVIEY IRFLQEKVQK YEATFPEWNQ ENAKILPWSK GQIPGDAVPD  420
PSQVMRNGSS PGFNVTGKLD DNHNTVTSAS GPQDQAETDR MTNNASSQCQ PQWTGPSPVH  480
NCAMNSDMLN NQELAIDEGT ISINLGKRAV KRPAAGVSFK STETHPSSNN KTGHQHMTLG  540
GGVEAPSHAT KRQKSGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-2711531317318PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00621.1.g00180.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0971961e-71FP097196.1 Phyllostachys edulis cDNA clone: bphylf049e04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699577.11e-160pentatricopeptide repeat-containing protein At3g12770
TrEMBLA0A368Q2I61e-161A0A368Q2I6_SETIT; Uncharacterized protein
STRINGLPERR09G10080.21e-141(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-40BES1-interacting Myc-like protein 2