PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00621.1.g00100.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 954aa MW: 102278 Da PI: 10.282

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00621.1.g00100.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.2e-09	534	582	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Zpz_sc00621.1.g00100.1.am.mk 534 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 582 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-15	529	591	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.68E-10	529	586	No hit	No description
PROSITE profile	PS50888	15.65	531	581	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-14	532	587	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	534	582	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-11	537	587	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence Send to blast
MWIGRRGAGG AEDKCMTRRP TRMVEKFMAQ AHSIEQLLGT LGPTEACGAT FVELHKAFSK 60 NSTRHHVDSD SNKVTWAEAS DRHLAHFQIP PHPLPELAHA APPRAQRPSP LAVAGGAVVH 120 PSVLVAASRM PPPTVPFFLT STTLAATNKP QLPAPPPTPP CDAQAQAATT ASLASASYAV 180 RMRLNPHLAL HLFDHMLRTG ECNAPRPASV AVHKARQRES GNKTWMAKEA LSGMPVNHCL 240 RVNSFFTFPC FFNFTFALWL LGFPALLHRA TSALLREVQP RSTDMNNESN EKGMESNRAS 300 SGVAGIPVEW QNQFSAAFPC PPAQQQAPMM DSFASAGLWA STSQAMGLSD AMSAARGTGF 360 LAPVPGFLPQ GLGHFPVDSG FIERAARASC FGGGGSGGEM MGSNAGFGAA DQPMSNAFSG 420 SSEALLDRQR KDGNDKAEPE LDGHEEVPSS EAAGGDCSSK GTLDSKKRRR PNEVQSSNLP 480 ANSANESVHS KDKGEESSPA TTAGKSKGKG SKETSDAQKE EYIHVRARRG QATNSHSLAE 540 RLRREKISER MKLLQDLVPG CSKVTGKAVM LDEIINYVQS LQRQVEMAYP SLGSQDLSMR 600 PSQDGFQMRS RTGRRSTQIK PASHPCAAVR DTLARLRRPV RLHAAGRLSQ SRWVGVSSGD 660 SDAGSDNPAR ASGPACHIPS TCLAPRARCR RSRSPMNVHR RTPVEVVRAP RDESRFVPRT 720 RCHLPRHALY STTAFLSPEE LNMNSPAGRP FLSISSVFAD RPLPTRTLRV AATDIPGPSP 780 EPHGMHGRME NWKDKQHSQH RAATCNWNVA RSYRCLPLSE TSFSSAPRGM TQMRRPCGAQ 840 GQRPETTRGH VRSSDSGLPA QQQLTSGTGT PMAGTGMAKG RRGPATIAAT WPDPAQLGGG 900 TACPEGGASW PESTQPGGGE AVSASRSSFD ITRPFIKPGE DDAVGARSLT ASRG

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence Send to blast

MWIGRRGAGG AEDKCMTRRP TRMVEKFMAQ AHSIEQLLGT LGPTEACGAT FVELHKAFSK  60
NSTRHHVDSD SNKVTWAEAS DRHLAHFQIP PHPLPELAHA APPRAQRPSP LAVAGGAVVH  120
PSVLVAASRM PPPTVPFFLT STTLAATNKP QLPAPPPTPP CDAQAQAATT ASLASASYAV  180
RMRLNPHLAL HLFDHMLRTG ECNAPRPASV AVHKARQRES GNKTWMAKEA LSGMPVNHCL  240
RVNSFFTFPC FFNFTFALWL LGFPALLHRA TSALLREVQP RSTDMNNESN EKGMESNRAS  300
SGVAGIPVEW QNQFSAAFPC PPAQQQAPMM DSFASAGLWA STSQAMGLSD AMSAARGTGF  360
LAPVPGFLPQ GLGHFPVDSG FIERAARASC FGGGGSGGEM MGSNAGFGAA DQPMSNAFSG  420
SSEALLDRQR KDGNDKAEPE LDGHEEVPSS EAAGGDCSSK GTLDSKKRRR PNEVQSSNLP  480
ANSANESVHS KDKGEESSPA TTAGKSKGKG SKETSDAQKE EYIHVRARRG QATNSHSLAE  540
RLRREKISER MKLLQDLVPG CSKVTGKAVM LDEIINYVQS LQRQVEMAYP SLGSQDLSMR  600
PSQDGFQMRS RTGRRSTQIK PASHPCAAVR DTLARLRRPV RLHAAGRLSQ SRWVGVSSGD  660
SDAGSDNPAR ASGPACHIPS TCLAPRARCR RSRSPMNVHR RTPVEVVRAP RDESRFVPRT  720
RCHLPRHALY STTAFLSPEE LNMNSPAGRP FLSISSVFAD RPLPTRTLRV AATDIPGPSP  780
EPHGMHGRME NWKDKQHSQH RAATCNWNVA RSYRCLPLSE TSFSSAPRGM TQMRRPCGAQ  840
GQRPETTRGH VRSSDSGLPA QQQLTSGTGT PMAGTGMAKG RRGPATIAAT WPDPAQLGGG  900
TACPEGGASW PESTQPGGGE AVSASRSSFD ITRPFIKPGE DDAVGARSLT ASRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00621.1.g00100.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121418	1e-100	AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
GenBank	HQ858863	1e-100	HQ858863.1 Oryza sativa Japonica Group isolate UT1672 bHLH- transcription factor mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	3e-42	bHLH family protein