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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zpz_sc00563.1.g00330.1.es.mkhc |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
LSD |
Protein Properties |
Length: 176aa MW: 18423.5 Da PI: 8.493 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zpz_sc00563.1.g00330.1.es.mkhc | genome | ZGD | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 41.8 | 1.7e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr lL YPrGApsV+Ca C+tV
Zpz_sc00563.1.g00330.1.es.mkhc 7 CNGCRSLLLYPRGAPSVCCAACHTV 31
************************9 PP
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2 | zf-LSD1 | 33.4 | 7.5e-11 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL Y+ +A+ VRC++CdtV
Zpz_sc00563.1.g00330.1.es.mkhc 46 CGGCQTLLVYTCNATTVRCSCCDTV 70
************************9 PP
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3 | zf-LSD1 | 48.8 | 1.2e-15 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C +C+t+L+YP+GApsV+Ca+C++V
Zpz_sc00563.1.g00330.1.es.mkhc 84 CAQCQTVLMYPYGAPSVKCAICNFV 108
***********************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009814 | Biological Process | defense response, incompatible interaction |
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response |
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
Protein Sequence Length: 176 aa
Download sequence Send
to blast |
MQGQIVCNGC RSLLLYPRGA PSVCCAACHT VTRVPPPGMD MARLICGGCQ TLLVYTCNAT 60 TVRCSCCDTV NLVRQVSSIA HVNCAQCQTV LMYPYGAPSV KCAICNFVTN IGVTTLRPFP 120 PAIPAPSANS YNVPSTSVPT NRSQNVTVVV ENPMTVGENG KLVSNIVVGV ATGGKK
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Functional Description ? help
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Source |
Description |
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |