 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zpz_sc00535.1.g00200.1.sm.mkhc |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
MYB |
| Protein Properties |
Length: 348aa MW: 37782.4 Da PI: 6.7009 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc00535.1.g00200.1.sm.mkhc | genome | ZGD | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 43.1 | 9.5e-14 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed lv+ +++ Gg+ +W+ +r g++R++k+c++rw +yl
Zpz_sc00535.1.g00200.1.sm.mkhc 15 KGPWTEDEDRTLVEHIQRRGGHvsSWRNLPRAAGLNRCGKSCRLRWTNYL 64
79**********************************************97 PP
|
| 2 | Myb_DNA-binding | 52.9 | 8.5e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T +E+ l++ +++ lG++ W+tIa ++ gRt++++k++w+++
Zpz_sc00535.1.g00200.1.sm.mkhc 70 RGNFTDDEERLIIALHADLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114
89********************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MGRSPCCCHD AGVKKGPWTE DEDRTLVEHI QRRGGHVSSW RNLPRAAGLN RCGKSCRLRW 60
TNYLRPDIRR GNFTDDEERL IIALHADLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLV 120
RAGVDPVTHR RLPPDVGILN GALASPGGPP AGTLLCAAAS SLRGQLDPAL IRQAQALQLL 180
LQVIGTCGSS NGSANALLGN CNLPTGNAMF TNNVNTSVAP NLQDQMMTIF SQANNQQSAG 240
YSYPPNSTAA ANFAEQGMVQ QYLKSSAPSP RYGSPNGVPA AADQYCDTTA TLERPAYPQE 300
VAAAGVDLPV PVPSFTDMLG PDDEMPNLYS LEEDGRFWDD MLHNSFSL
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM156904 | 1e-163 | AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene). |
| GenBank | BT054398 | 1e-163 | BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds. |
| GenBank | HF679432 | 1e-163 | HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein. |
| GenBank | HQ858691 | 1e-163 | HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds. |
