PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00463.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 318aa    MW: 34662.2 Da    PI: 11.4277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00463.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18142190355
                           AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++GVr ++ +g+++AeIrd +     + kr +lg+f+taeeAa+ ++ a+ +l+g
  Zpz_sc00463.1.g00120.1.am.mk 142 FRGVRLRP-WGKYAAEIRDpW-----QrKRLWLGTFDTAEEAAAVYDDAAVRLKG 190
                                   8*******.**********77.....44***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.944141198IPR001471AP2/ERF domain
SMARTSM003802.4E-34141204IPR001471AP2/ERF domain
PRINTSPR003672.8E-9142153IPR001471AP2/ERF domain
CDDcd000184.11E-18142200No hitNo description
SuperFamilySSF541715.3E-21142200IPR016177DNA-binding domain
PfamPF008472.2E-9142190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-28142199IPR001471AP2/ERF domain
PRINTSPR003672.8E-9164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSSPSDSSAA GRSRRVSLPL PHPKRVRVSF VDADATDTDS SSDEDERGNR RVREVIEIDV  60
QAASVPAKRS RRALPPHVVL ARRHRAKAAG AGLRRPFRGV IEIDVQAASV PAKRSRRALP  120
PHVVLARRHR AKAAGAGLRR PFRGVRLRPW GKYAAEIRDP WQRKRLWLGT FDTAEEAAAV  180
YDDAAVRLKG SNAVTNFPSS VAAAEAPARS SRKERRPRGG LVRDAASEAH PSPQPPSPPQ  240
PQARTGEAVP VRELAPPTSV LRYADEVALP AFDFFYGGFG ELAAAAQSKA AEFEWMPWWE  300
GEEFVTSVVT TASAVTVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-19140205470ATERF1
3gcc_A6e-19140205470ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00463.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241415e-54AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence.
GenBankAK1106135e-54AK110613.1 Oryza sativa Japonica Group cDNA clone:002-168-H06, full insert sequence.
GenBankAP0149615e-54AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126135e-54CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804895.11e-67ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2T7EG765e-68A0A2T7EG76_9POAL; Uncharacterized protein
STRINGPavir.Ia04256.1.p3e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.13e-16ERF family protein