PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00449.1.g00070.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRF | ||||||||
Protein Properties | Length: 235aa MW: 24828.3 Da PI: 4.343 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71.4 | 1e-22 | 153 | 197 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r + ++e Zpz_sc00449.1.g00070.1.sm.mkhc 153 EPEPGRCRRTDGKKWRCWRSTIQNEKYCERHMHRGRKRPVQLVVE 197 69************************************9998875 PP | |||||||
2 | QLQ | 53.5 | 7.1e-19 | 87 | 122 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k Zpz_sc00449.1.g00070.1.sm.mkhc 87 AFTAMQLQELEQQSRVYQYMAARVPVPTHLIFPIWK 122 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.2E-8 | 86 | 122 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.888 | 87 | 122 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.4E-12 | 87 | 121 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.049 | 153 | 197 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-19 | 154 | 192 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MAAEGEAANP AGGGSGGDSY PQEVVAAADE AAQGSGQEPA GEMANREGAD GGDGGGAEEK 60 DDGAYGDLVL VEGPEALAVE GLDKGAAFTA MQLQELEQQS RVYQYMAARV PVPTHLIFPI 120 WKNVTGASSE GAQKYPTLMG LATLCLDFGE DPEPEPGRCR RTDGKKWRCW RSTIQNEKYC 180 ERHMHRGRKR PVQLVVEDDE PDSASGSKTT PGKADDKSAN NMKLDVAAPA SVEST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00449.1.g00070.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800926.1 | 1e-113 | growth-regulating factor 11-like | ||||
Swissprot | A5HEG9 | 1e-110 | GRF10_MAIZE; GRF-interacting factor 10 | ||||
TrEMBL | A0A2S3H2A3 | 1e-111 | A0A2S3H2A3_9POAL; Uncharacterized protein | ||||
STRING | Si030809m | 1e-111 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 9e-29 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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