PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00436.1.g00070.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 348aa MW: 36635.2 Da PI: 7.3287

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00436.1.g00070.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.2	8.3e-36	40	138	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkC ++C++ap+f +eq kf++vh +FGas++ kll+++p+++r+da+ s++yeA+ar+ dPvyG+ + i Zpz_sc00436.1.g00070.1.am.mk 40 PCGACKFLRRKCINGCIFAPHFDSEQgVTKFEMVHTVFGASKIAKLLDEIPQHKRPDAIFSICYEAQARICDPVYGCSNQI 120 7*********************9977************************************************* PP DUF260 81 lklqqqleqlkaelallk 98 l+lq+q+ +l+ael ++ Zpz_sc00436.1.g00070.1.am.mk 121 LALQEQVWNLQAELTNMQ 138 ***********98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.659	39	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-35	40	137	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MGSMAHGVGG PSLSGGIGGG GGGGDGGSGN EGGGGGRSEP CGACKFLRRK CINGCIFAPH 60 FDSEQGVTKF EMVHTVFGAS KIAKLLDEIP QHKRPDAIFS ICYEAQARIC DPVYGCSNQI 120 LALQEQVWNL QAELTNMQIR LAEMELARQS TFVGEPHISI ASTFPVYNLP ASSNILATIN 180 PSSLSDLQTQ SQLASQQQVQ HQQLHQQQFV QEGGSVMGNS NDLLALESEL MYGVTGVAPP 240 LQDTYQRFLS SHPSLAPPST SICHAFRVAQ SSVGSCVGAG SRCDDVGRGR RRRRADSPMM 300 GVAHHVAAAV VGLDGARHAV LANVESGIRS TERRGLGPKS THSTTPSA

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MGSMAHGVGG PSLSGGIGGG GGGGDGGSGN EGGGGGRSEP CGACKFLRRK CINGCIFAPH  60
FDSEQGVTKF EMVHTVFGAS KIAKLLDEIP QHKRPDAIFS ICYEAQARIC DPVYGCSNQI  120
LALQEQVWNL QAELTNMQIR LAEMELARQS TFVGEPHISI ASTFPVYNLP ASSNILATIN  180
PSSLSDLQTQ SQLASQQQVQ HQQLHQQQFV QEGGSVMGNS NDLLALESEL MYGVTGVAPP  240
LQDTYQRFLS SHPSLAPPST SICHAFRVAQ SSVGSCVGAG SRCDDVGRGR RRRRADSPMM  300
GVAHHVAAAV VGLDGARHAV LANVESGIRS TERRGLGPKS THSTTPSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-34	36	141	7	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-34	36	141	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00436.1.g00070.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019705568.1	1e-54	LOB domain-containing protein 18-like
STRING	XP_008776002.1	5e-53	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36151	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	4e-46	LBD family protein