PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00418.1.g00380.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 318aa    MW: 33301.6 Da    PI: 7.849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00418.1.g00380.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00095129151123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C  C+k+F++   L  H  +H
  Zpz_sc00418.1.g00380.1.sm.mk 129 YECRTCNKCFPTFQALGGHRASH 151
                                   99**********99999998887 PP
2zf-C2H211.80.00072222244123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cg  F +   L  H+r+H
  Zpz_sc00418.1.g00380.1.sm.mk 222 HECSICGAEFASGQALGGHMRRH 244
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-8128151No hitNo description
PfamPF139121.9E-10128153IPR007087Zinc finger, C2H2
SMARTSM003550.16129151IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014129156IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-8217244No hitNo description
PfamPF139121.4E-12221245IPR007087Zinc finger, C2H2
SMARTSM003550.016222244IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64222249IPR007087Zinc finger, C2H2
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MQAEGESKLA PTSSTEHSGE LDRHQPLAGA VVKRKRTKRP RHLPPASSAS SSESTTTEEE  60
DMAHCLILLA QGGAGAVVDS KPASAPQPQP PVVPRQAPPP AVKSERYTSR KYTEAATTAD  120
GVKAGFYVYE CRTCNKCFPT FQALGGHRAS HKKPRLPAGD QEEIASAISN KPSPATMTTA  180
SPPPIPPPRI DIVAVFPDVT TALSLNSHVT AGSGGGEKLR VHECSICGAE FASGQALGGH  240
MRRHRPLNAP VTAITTMDTK KEGSGASINL ELDLNLPAPS DVEEAVSLPP VALGLGQFND  300
GKKAGLMLTA SALVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00418.1.g00380.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039891e-67AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040261e-67AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149581e-67AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-67CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822199.11e-123zinc finger protein ZAT5-like
TrEMBLA0A2S3GUR41e-122A0A2S3GUR4_9POAL; Uncharacterized protein
STRINGPavir.Ab03370.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-42C2H2 family protein