PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00373.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 435aa    MW: 48101.6 Da    PI: 10.1117
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00373.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.79.7e-491022272128
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                   +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgy
  Zpz_sc00373.1.g00050.1.am.mk 102 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGY 181
                                   79***************************.89***************888889**************************** PP

                           NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   Wkatg d+ v +++++ +glkktLvfy g+apkg +++W+m+eyrl
  Zpz_sc00373.1.g00050.1.am.mk 182 WKATGADRMVRVEGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 227
                                   ********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-55101247IPR003441NAC domain
PROSITE profilePS5100555.246101247IPR003441NAC domain
PfamPF023658.9E-24103227IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MNSRKIFTSC GQNSVPALVV VTAQLRFRPP PSPFVGGPGP SIRLSPFSTE LGKLGSWPRR  60
WVMIQDRRGS MRGGDQHHHH DMATRGAGGG DDGQQPAHDM VMPGFRFHPT EEELIDFYLR  120
RRVEGKRFNI ELINLVDLYR YDPWDLPALA SIGDKEWFFY VPRDRKYRNG DRPNRVTPSG  180
YWKATGADRM VRVEGNRSIG LKKTLVFYVG KAPKGLRSSW IMNEYRLPHG EADRYQKEIS  240
LCRVYKRPGI EDNFHLTGTA ARSSSSKGAA AMDKKHRSSP RLAPVFDGGH SSSALMNKPY  300
SGAANNGLMS STSAAAPAAT MALQPSMFRS TAGSVASLSS TTSTEEDGTS LYHLKCANPL  360
LPSSTHALLN MNSTAMATIP IDELSRAVGS YSDQLGNPNQ QPLPSQGPLL PFPSMEKIWD  420
WNPLLEFPKV CSSFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-5210324719165NO APICAL MERISTEM PROTEIN
1ut4_B6e-5210324719165NO APICAL MERISTEM PROTEIN
1ut7_A6e-5210324719165NO APICAL MERISTEM PROTEIN
1ut7_B6e-5210324719165NO APICAL MERISTEM PROTEIN
4dul_A6e-5210324719165NAC domain-containing protein 19
4dul_B6e-5210324719165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00373.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973013.10.0NAC domain-containing protein 35
TrEMBLA0A1E5V4Y20.0A0A1E5V4Y2_9POAL; NAC domain-containing protein 35
STRINGPavir.J38855.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.25e-94NAC domain containing protein 35