PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00338.1.g00390.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HSF | ||||||||
Protein Properties | Length: 390aa MW: 44236.8 Da PI: 7.1746 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 100 | 2.2e-31 | 47 | 137 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+++++ d++++ ++sw + gnsf+v+d++ fa +Lp++Fkh+nf+SFvRQLn YgF+k+++ + weF+ Zpz_sc00338.1.g00390.1.sm.mk 47 FLTKTFDLVADPAIDGVVSWGRGGNSFIVWDPHVFAAVLLPRFFKHNNFSSFVRQLNNYGFRKIDSGR---------WEFA 118 9***************************************************************9988.........**** PP ESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkk 101 ++ F +g+++ll++ikr++ Zpz_sc00338.1.g00390.1.sm.mk 119 NEGFLRGHRHLLRTIKRRR 137 *****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.4E-35 | 43 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.05E-33 | 43 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.7E-54 | 43 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.2E-29 | 47 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-17 | 47 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-17 | 85 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 86 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-17 | 98 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MDHLPLLGMA TVKKEWPPSS PPEEEVMNAV GAPRPMEGLH EVGPPPFLTK TFDLVADPAI 60 DGVVSWGRGG NSFIVWDPHV FAAVLLPRFF KHNNFSSFVR QLNNYGFRKI DSGRWEFANE 120 GFLRGHRHLL RTIKRRRPPS YLAPSQQQHQ QALGSYLEFG HFGVDDEIER LKRDKNILLA 180 EVVKLRQEQQ SAKADVQAME ERLQRAESKQ VQMMGFLARA MQNPDFFHQL LLAHQHQGKR 240 NELEDAFSKE RRRPIRIISA ATASSCQTTA WQSEEELDSS AVLFRSSCRQ FEELSEPRTS 300 ELENLALSIQ GLRKRKHDEN SQAGGGRSSN QGGETAELTD DFWKELLSEG MRGEGDMSVA 360 EVEERRRPPP GRYVDALAQR LGLLSNNTAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-23 | 45 | 136 | 18 | 120 | Heat shock factor protein 1 |
5hdg_A | 8e-23 | 45 | 136 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 8e-23 | 45 | 136 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 8e-23 | 45 | 136 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 8e-23 | 45 | 136 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 8e-23 | 45 | 136 | 8 | 110 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00338.1.g00390.1.sm.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985605.1 | 1e-161 | heat stress transcription factor A-2d | ||||
Swissprot | Q8H7Y6 | 1e-158 | HFA2D_ORYSJ; Heat stress transcription factor A-2d | ||||
TrEMBL | A0A1E5WLF6 | 1e-175 | A0A1E5WLF6_9POAL; Heat stress transcription factor A-2d | ||||
STRING | Si038907m | 1e-160 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 2e-96 | heat shock transcription factor A6B |