PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00304.1.g00390.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 525aa MW: 55457.9 Da PI: 6.0347 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.0007 | 61 | 78 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F++++ + H Zpz_sc00304.1.g00390.1.sm.mk 61 VCKNCGKEFTSWERFLDH 78 7***********999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 210 | 60 | 80 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.53E-7 | 227 | 250 | No hit | No description |
PROSITE profile | PS50157 | 10.221 | 228 | 255 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.4E-8 | 228 | 252 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.25 | 228 | 250 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 230 | 250 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.53E-7 | 341 | 368 | No hit | No description |
PROSITE profile | PS50157 | 9.182 | 346 | 368 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.4E-11 | 346 | 369 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.7 | 346 | 368 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 348 | 368 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MRAHSSSDDV FAGAGADDGD EPARGRGPSD DQWDAAGTSS STTPAYALRA NPNRQVRSCQ 60 VCKNCGKEFT SWERFLDHGR CNSDDEGRAE GSGSPRHSLS PSEADDGEED PAVSATEWSK 120 GKRSRRVKSV AALDDAPATS SRRFMSGEEE DLANCLVMLS SSNTEQAATV TRTNTQQKQS 180 ASVSRERDRG PQLLHQISFL AQAPDPVMAL PSATTTIQYV SPAPRGMFEC KACKKEFTSH 240 QALGGHRASH KKVKGCFAAR LESNVSKTPS HAAPVDRNED NGKAVVVEGS THATTDTKPS 300 CNAGTDGDTN VGTTSETAAA LSMALAPAAA FNVAEAPSGK KNAKMHECSV CHRLFTSGQA 360 LGGHKRCHWL TSSTADPTIP VANLSVPPIT EDLVGAVRHQ LMLRPMVDAS EPALDLTISA 420 KLSTLTPAPG SSTFHLDASA QALHLQSSVE PGNASHRNTC GHDDNDVAAT ASNAAQDESE 480 SISIKRARLT DLKDVVRMDE EASEPWLQVG IGSSSAGGDE KNSRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00304.1.g00390.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825379.1 | 0.0 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A1E5WGG6 | 0.0 | A0A1E5WGG6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01112.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 3e-17 | C2H2-like zinc finger protein |