PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00298.1.g00330.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 795aa    MW: 85193.9 Da    PI: 8.6277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00298.1.g00330.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045224246123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kCp Cg++F++ + L  H+ +H
  Zpz_sc00298.1.g00330.1.am.mk 224 HKCPVCGEVFPSGMALGGHMGKH 246
                                   79**************9999887 PP
2zf-C2H216.42.6e-05625648123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   y+C++Cg+sF ++  L  Hi+  H
  Zpz_sc00298.1.g00330.1.am.mk 625 YVCTICGRSFATPQALGGHISAgH 648
                                   9***************99998777 PP
3zf-C2H212.50.00045664686123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kCp Cg++F++ + L  H+ +H
  Zpz_sc00298.1.g00330.1.am.mk 664 HKCPVCGEVFPSGMALGGHMGKH 686
                                   79**************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035598185208IPR015880Zinc finger, C2H2-like
PfamPF139120.027189203IPR007087Zinc finger, C2H2
SMARTSM003550.011224246IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642224251IPR007087Zinc finger, C2H2
PfamPF139121.4E-8224248IPR007087Zinc finger, C2H2
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
PROSITE profilePS510329.783241327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-4300328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.40.104.7E-4611675IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576674.17E-5623686No hitNo description
PfamPF139121.4E-5624643IPR007087Zinc finger, C2H2
SMARTSM003550.052625648IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93625653IPR007087Zinc finger, C2H2
PROSITE patternPS000280627648IPR007087Zinc finger, C2H2
SMARTSM003550.011664686IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642664691IPR007087Zinc finger, C2H2
PfamPF139121.4E-8664688IPR007087Zinc finger, C2H2
PROSITE patternPS000280666686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MRGLRPFPLP ALLRSSAGSE LTAPAATAQL KRPGRALQNC DHCNRSIVVR VPPSVGNRSS  60
ALQTLQVEAL ARCNHDRKTL SPVTHGPPLA TVTAARSATL AALPSAWTRP RASSSPNPVV  120
TPVAFAESNP SPASSVESSS PQTEFKPSNM AFVHQQQPPE AVDHEHQPAL AAPPAQGPDP  180
PQGKYVFRIC GRSFATPQAL GGHISAGHNY RQRKAAEPAE RREHKCPVCG EVFPSGMALG  240
GHMGKHRDRP QTEGKKQRVE PPPPAPVAPP APPASPAAGT MADEGIQTGQ SPEVKGIRAF  300
NSEDAVARTY DLAAIKYWGS RCVLNFPERA DFSVESYKQE REKMKPMTRE GYLATLRRRS  360
SGFSRGASEY RGVACGPAPP ERPVGSQDWS FRRQEIHLCG DIRSTESVPE CPVPNDHLPA  420
EEATPPLQLK PEPEEALLDA DDVDHVIAAI LAALCMDTAV RRLRGPVPRP PCARAPTAYC  480
LRSGSTQYWA GPTGFQKELS SPSARRSHND KTYHPSPMAP PSPRSSPTPA TSDRDSRTIS  540
DACCSAVGAV DAATSVPEPR RRPLVRPTPV AFAESNPSPA SCVESRSPPS EPKPSNEVFV  600
HEQQPCEVDD HEHQPAQDPD PPKRYVCTIC GRSFATPQAL GGHISAGHNY RQRKAADPAD  660
RKEHKCPVCG EVFPSGMALG GHMGKHRDRP QTAGKKSKKQ RVEPPPAVPV APLAPLASAA  720
AAGTMAEVTL PQETQAGQPS HSPPEVNGTR LFGVYMSPNV NIIRLFGVYM SPHVLIEAPA  780
EQNPDHGKDR SSNGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1559566RRRPLVRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00298.1.g00330.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3463434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.23e-14ERF family protein