PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00286.1.g00350.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 395aa MW: 42433 Da PI: 4.2971 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.1e-13 | 147 | 192 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + e+ErrRR+++N ++ +Lr+l+P+ +K++ a+iL A++YI Lq Zpz_sc00286.1.g00350.1.sm.mk 147 NLEAERRRRKKLNGRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 192 5689*********************7.....7***************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.05E-14 | 140 | 203 | No hit | No description |
SuperFamily | SSF47459 | 6.28E-18 | 140 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.317 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-10 | 146 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-15 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-16 | 149 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MAEGEQMAEL VMAQCGVPER AAAAGTEGVQ AQPWAEPPGF AWDAVVPSLN LFDATGADPF 60 LATQQASSAV VDDEAVAGWQ YAAAAAAGSE PVSVAVQQEQ LHAGRAESGS DGSDLQGDRD 120 PELDDDDGEQ GQAADGKGGG RRQQSKNLEA ERRRRKKLNG RLYKLRSLVP NITKMDRASI 180 LGDAIDYIVG LQKEVKALQD ELEEPDVLVD HPPPASLVGL ENDDSSPRTG QHPLAGSKRS 240 WAAAVAEEEK GHDMEPQVEV RQVEANEFFL QLLCERKPGR FVRIMDAVRA LGLEVTNVNV 300 TSYNSLVLNV FRAIMRDNEV AVQADRVRDS LLQVTRESYG GVWSSAAAPP VGSGIDVKQL 360 DAGEIKLDGI DAQQASIAAE DDHYGGYNHL LQYLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 157 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00286.1.g00350.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825508.1 | 1e-162 | transcription factor TDR-like | ||||
Refseq | XP_025825517.1 | 1e-162 | transcription factor TDR-like | ||||
Refseq | XP_025825524.1 | 1e-162 | transcription factor TDR-like | ||||
Refseq | XP_025825535.1 | 1e-162 | transcription factor TDR-like | ||||
Refseq | XP_025825544.1 | 1e-162 | transcription factor TDR-like | ||||
Refseq | XP_025825551.1 | 1e-162 | transcription factor TDR-like | ||||
Refseq | XP_025825560.1 | 1e-162 | transcription factor TDR-like | ||||
Swissprot | Q6YUS3 | 1e-112 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | A0A2S3GKL9 | 1e-161 | A0A2S3GKL9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QCU4 | 1e-161 | A0A3L6QCU4_PANMI; Transcription factor ABORTED MICROSPORES-like isoform X2 | ||||
STRING | Si006500m | 1e-149 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5530 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 2e-54 | bHLH family protein |