PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00284.1.g00200.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YA | ||||||||
Protein Properties | Length: 258aa MW: 27812.6 Da PI: 6.5749 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 38.4 | 4.2e-12 | 145 | 167 | 36 | 58 |
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58 pylheSRh hAlrR+RgsgGrF Zpz_sc00284.1.g00200.1.am.mkhc 145 PPYLHESRHLHALRRARGSGGRF 167 69********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.8E-6 | 102 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.0E-10 | 126 | 167 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 15.416 | 146 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MMSFSRHNEG FGHFATAANS TGAPLSWWPG GPHQLLYGEP LGQGKPPAVL EPEEPCRESR 60 FQVVPVSQAP KAAQREREFA DVSRFSSAQG EDKGSDHSAT VAFQSPSALY SGRFELGLGH 120 SVISSKNPYA EQHYGLIAPY GAGEPPYLHE SRHLHALRRA RGSGGRFLNT KKEANGKDAG 180 AGGKTTLSNP LMLQTASPGS EIQQSELGSL SSVSSFSGSE VSSMYDHEDV DHYHSFDQLR 240 TPFFTPLPSL MDGEHGGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00284.1.g00200.1.am.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963196.1 | 3e-95 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_022680516.1 | 3e-95 | nuclear transcription factor Y subunit A-10 | ||||
Swissprot | Q9M9X4 | 8e-14 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A0A9CZS6 | 1e-102 | A0A0A9CZS6_ARUDO; Uncharacterized protein | ||||
STRING | Si022607m | 1e-94 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 1e-12 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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