PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00228.1.g00080.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 35826 Da PI: 7.6503 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.8 | 5.5e-33 | 50 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatg 71 +p+G++F+P+d+el+ ++L+ v++ ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y++g Zpz_sc00228.1.g00080.1.sm.mkhc 50 MPAGVKFDPSDQELI-HHLRTMVDDGGsrahplIDEFIPtIQGDdGICYTHPENLP-GVRKDGLSKHFFHRPSKAYTNG 126 699************.99*****99986665443332333665546**********.666677799************* PP NAM 72 krknra............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +rk+r+ +++ +W++tgk++++++ +g++ g+kk+Lv+y g+++k+ekt+Wvmh+y+l Zpz_sc00228.1.g00080.1.sm.mkhc 127 TRKRRKiharrdlnssdnAAEMRWHKTGKTRPLIV-EGRQEGCKKILVLYanFGKRRKPEKTNWVMHQYHL 196 *****879999999988877899************.9999**********6547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-35 | 43 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.993 | 50 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-14 | 51 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MNRELPIPTI SSSCGLEITA GKFEHRRVST LRSCPSCGHA IDCNTDMVGM PAGVKFDPSD 60 QELIHHLRTM VDDGGSRAHP LIDEFIPTIQ GDDGICYTHP ENLPGVRKDG LSKHFFHRPS 120 KAYTNGTRKR RKIHARRDLN SSDNAAEMRW HKTGKTRPLI VEGRQEGCKK ILVLYANFGK 180 RRKPEKTNWV MHQYHLGDQE EKDGELVVSK VFYQTQTRQH VATAAPAMVA TAEQDSMRGE 240 EAAETSEETQ DELSGCAAAS TTSMVVMMQQ RQQRRTNRDD GQFRVADSRK RDHEGASTQS 300 ETEQVYWPPD RNQEQHG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00228.1.g00080.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960907.1 | 1e-128 | NAC domain-containing protein 73 | ||||
Swissprot | Q9M0F8 | 5e-97 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A1E5W3H8 | 1e-125 | A0A1E5W3H8_9POAL; NAC domain-containing protein 73 | ||||
STRING | Pavir.J36494.1.p | 1e-122 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-98 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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