PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00220.1.g00150.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 753aa MW: 84468.2 Da PI: 4.5924 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.4 | 4.1e-17 | 67 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatg 71 lp+G++F+P+d++l+ +L+++v + ++++ v i++ + ++P+d+p ++ + + yfF+kr + Zpz_sc00220.1.g00150.1.sm.mkhc 67 LPRGVEFNPSDSDLL-WHLAAEVGNGLdhrhpfISEFIVpIDDDkGFSCTHPQDIP-GIRLDGRASYFFHKRFHLLC-- 141 699************.6788888766556666655555668877568888******.666788999*****998765.. PP NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 n+ +s W++ g+ ++++ +g+l g+++ +++y + ++++++ktdW +h+y++ Zpz_sc00220.1.g00150.1.sm.mkhc 142 --DNKNGQSISWQKIGTPTSIIL-DGTLCGCREEFILYayNMSDNNPQKTDWRLHQYHI 197 ..344445567************.999*********99666799999**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-22 | 61 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.181 | 67 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-7 | 68 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 753 aa Download sequence Send to blast |
MAAGTHLPPS RLSIDPDHLP LSVRRGGPVG PSVPLAEEAP VRDRHEARTD AGDADGAVKK 60 HQVWPGLPRG VEFNPSDSDL LWHLAAEVGN GLDHRHPFIS EFIVPIDDDK GFSCTHPQDI 120 PGIRLDGRAS YFFHKRFHLL CDNKNGQSIS WQKIGTPTSI ILDGTLCGCR EEFILYAYNM 180 SDNNPQKTDW RLHQYHIRDR MKDEEELVLS KIFYHSQNNL CESAEKNHAE YELPCKDILD 240 YTETDDLDHM SLQERYRILQ ADKSSCPARI PAGIILDVGT SGTAPKRTHE GATYKEDICS 300 MLQEIPSAPP IEESIDDGNG TSFLGKDLSG TQLSHMECFV GSNPNQTACS SDNLELPATQ 360 PTHGSGCNQL VVRKHGTFLI DVKSEPELES YANDSSGSQG VSHHSTENVC LEGADSVPGH 420 VTKDHENEML HDHRDFVEKM SDICTSISVE ATSQDKNTHD DSSVPLPLLG VKSELTEGDF 480 LGLCENSCKN AVENIFEKTH TQILDHDGSI AFHAETNVEG IAYSSCRRRR RKTATDSIEK 540 ALDEDAPGLL QILMDKGITV EEIKLYGAEE DDEMVPDAEN NFDDLENIII KSRYLKFRDC 600 PVEWGWCRDL QSFIFVFRSH NRIVLERPEY GYATYFFEVV QSLPIEWQVG EDLTEGEARV 660 LEEYGWIRNC GLGTMLNYRD RVVHDRWTEK CVADWRMKIG KLLMAGYAEG QTITTHLPKK 720 LGDLLEDAGD VGIDIKLEDT CDIEIDVKLE DPF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00220.1.g00150.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU945361 | 3e-45 | EU945361.1 Zea mays clone 261633 mRNA sequence. | |||
GenBank | EU973065 | 3e-45 | EU973065.1 Zea mays clone 392770 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795332.1 | 0.0 | uncharacterized protein LOC112875626 isoform X1 | ||||
TrEMBL | A0A2T7CFK7 | 0.0 | A0A2T7CFK7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00786.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7479 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 9e-33 | NAC family protein |