PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00192.1.g00300.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 485aa    MW: 53158.9 Da    PI: 4.9877
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00192.1.g00300.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.3e-34301212101
                                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS
                    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 
                                     Fl k+ye+++d++++e++sws ++  sfv+++++efa ++Lp+yFkhsn++SF+RQLn+YgF+k++ e+         w
  Zpz_sc00192.1.g00300.1.sm.mkhc  30 FLLKTYEMVDDPSTDEVVSWSdASDASFVIWNSTEFAARLLPTYFKHSNLSSFIRQLNTYGFRKIDPER---------W 99 
                                     9********************66679****************************************999.........* PP

                                     EEEESXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  80 eFkhksFkkgkkellekikrkk 101
                                     eF+++ F kg+k+ll++i+r+k
  Zpz_sc00192.1.g00300.1.sm.mkhc 100 EFANEFFVKGQKHLLKNIHRRK 121
                                     ********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5726120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-3526120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.98E-3326120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-183053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-3030120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEVAAGGARG SAAGGGGGGG GGGGGGPAPF LLKTYEMVDD PSTDEVVSWS DASDASFVIW  60
NSTEFAARLL PTYFKHSNLS SFIRQLNTYG FRKIDPERWE FANEFFVKGQ KHLLKNIHRR  120
KPIHSHSHQP GALPDNARAA FEDEIDRLSR EKAALQAELL KFSQQQSGAT IQIEDLERRV  180
LDMEQRQVKM LNFLQQASKN PQFVNKLVKM AETSPIFSDA YHKKRRLPVL DYGTESTEIT  240
SFYDDHSSTS KQEMGNLLNQ HFSDKLKLGL SSAVAESNLI TLSTQSSHED NGSANGKLPD  300
CDRVSMECLP LVPQMMELSD TGTSICPSKS SCFTTAVIDE GLLPCQLNLT LASCSMDAER  360
NQTPNANGNS INQDQGIENP LVAATTTPME KDDGLSRHHD DSHQRTPNDA DSAAATTTSR  420
GNAQVSTEAP PAPPAVANDK FWEQFLTERP GCSETEEASS TQRDPSRKQI EDTTNDRTDM  480
QQLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2271201129Heat shock factor protein 1
5d5v_B2e-2271201129Heat shock factor protein 1
5d5v_D2e-2271201129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00192.1.g00300.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952518.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A0D9VG520.0A0A0D9VG52_9ORYZ; Uncharacterized protein
STRINGLPERR02G13860.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-119HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]