PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00188.1.g00230.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 334aa MW: 35986.8 Da PI: 7.8273

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00188.1.g00230.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	9.7e-13	61	112	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +hn+ Er RR+++N+ ++ Lr+llP+ + + kK+s +++ ++ +YI +Lq Zpz_sc00188.1.g00230.1.am.mk 61 KLSHNAYERDRRKELNELYSSLRSLLPNdD---HTKKMSIPTTVCRVLKYIPELQ 112 579***********************44...6666*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-15	57	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.586	59	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-11	61	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-10	61	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.41E-9	61	115	No hit	No description
SMART	SM00353	8.8E-8	65	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDDQLFDDHF ASHISALEAD IFSGDQLPWP DLDLDDDNIL QDLAPPAANA SSSGGSGSRS 60 KLSHNAYERD RRKELNELYS SLRSLLPNDD HTKKMSIPTT VCRVLKYIPE LQKEVDSLER 120 KKEELTKANC RKRGNDMNTT ESKTPVVSVT FLNDMEIIVQ VSLLCNLATT TLPLSKCVKV 180 SSASSHDSST APPPGPCTAA AQAPQPPPQA IAHAAASPPP TQAPLLPPQA PLLPLPSTAL 240 LPPQATTTPP PSHFDCPVLD LLFAPPAPLQ QPRRRAATSA TCSCHFPIWS PASATIAGSS 300 SRRAARKAAS VPACCTAHDR TCRFHLACCS RRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250\|UniProtKB:Q0JFZ0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00188.1.g00230.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695873.1	3e-66	PREDICTED: transcription factor bHLH100-like
Swissprot	A2WZ60	4e-58	IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBL	J3L7X4	7e-65	J3L7X4_ORYBR; Uncharacterized protein
STRING	OB01G53300.1	1e-65	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3280	34	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04150.1	1e-24	bHLH family protein