PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00120.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 428aa MW: 46364.7 Da PI: 7.0765

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00120.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.2	1e-06	270	311	9	55
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r RR+ri ++ +eL +l+P +ls ae+L +A +++k Lq Zpz_sc00120.1.g00040.1.am.mk 270 ARERRRRISQKTAELSRLIPGgH------RLSTAEMLHEAAHHVKLLQ 311 5889999***********955......9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.426	261	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-9	265	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-6	267	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-7	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.80E-7	269	314	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MDKAHDCGAR SPRPSRRHEL VVAPPPDERE AEAATRRWRL HGMWRRSIQG AKNLHEKQNE 60 SRGLAAHPPS ISRRCRILLP PASPPPPPPP SQNSLSSSAQ QPPMALSFHP TTAPVFGHGL 120 PAPDAADVTS FLHDVHPEVS DALLGFVYDP LDAASTDAVL EDLLSIPNDA DAFTTGPVVD 180 DCDVSGFLGP IEDQFLTEVI EVEQHCDKKL RTACNCNQQA PAALPEFLTE FDLPPPPLKQ 240 PPTPLTFVHG ADDAKKPGGN GGQSVQSTAA RERRRRISQK TAELSRLIPG GHRLSTAEML 300 HEAAHHVKLL QAQVGMLALM RSVGSSENEK LPIAAAQEQM HALLVSGSVQ ERLTAERKCL 360 VPRKLVDAMA RDKAVKSNPL VNRDLTRPPL ACIRARTAAS LFAENAVRRA AGAVVCWFLT 420 PDPDDVCP

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MDKAHDCGAR SPRPSRRHEL VVAPPPDERE AEAATRRWRL HGMWRRSIQG AKNLHEKQNE  60
SRGLAAHPPS ISRRCRILLP PASPPPPPPP SQNSLSSSAQ QPPMALSFHP TTAPVFGHGL  120
PAPDAADVTS FLHDVHPEVS DALLGFVYDP LDAASTDAVL EDLLSIPNDA DAFTTGPVVD  180
DCDVSGFLGP IEDQFLTEVI EVEQHCDKKL RTACNCNQQA PAALPEFLTE FDLPPPPLKQ  240
PPTPLTFVHG ADDAKKPGGN GGQSVQSTAA RERRRRISQK TAELSRLIPG GHRLSTAEML  300
HEAAHHVKLL QAQVGMLALM RSVGSSENEK LPIAAAQEQM HALLVSGSVQ ERLTAERKCL  360
VPRKLVDAMA RDKAVKSNPL VNRDLTRPPL ACIRARTAAS LFAENAVRRA AGAVVCWFLT  420
PDPDDVCP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00120.1.g00040.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661333.1	1e-89	uncharacterized protein LOC101765829
TrEMBL	A0A3L6S6L1	2e-89	A0A3L6S6L1_PANMI; Uncharacterized protein
STRING	Pavir.Ia04589.1.p	6e-94	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6201	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	3e-22	bHLH family protein