PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00097.1.g00580.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 480aa MW: 51135 Da PI: 4.3135

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00097.1.g00580.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5.1e-13	215	258	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq Zpz_sc00097.1.g00580.1.sm.mk 215 VAERRRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 258 58*******************7.....7*************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-18	206	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.40E-14	208	262	No hit	No description
PROSITE profile	PS50888	15.974	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-16	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-10	215	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-16	215	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048657	Biological Process	anther wall tapetum cell differentiation
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MVSNQPIWQT NSVTDQLPTG SYSSELGAGG PRTRLLVPVA GGLVELVASR YMAEEVQMAE 60 LVMAQCGVPE RAAAGKEGDA GALQAPQAWA EQPCFAWDDG AADPQAQRMY VVPPSLNLFD 120 AANPFLAVQQ ASSTVVDDAA AGGWQYAAAA AGSEPSSVAV PQEQLQVGRA GGGAESVSEG 180 SDLQGDPDLD DGDGDQSQVA GGKGGGKRQQ CKNLVAERRR RKKLNDRLYK LRSLVPNITK 240 MDRASILGDA IDYIVGLQNQ VKALQDELED PDAPADGVIP DVLLDHPPPA SLVGLENDES 300 PRTSQQQPLA GSKRSRTAEE EKGLDMEPQV EVRQVEANEF FLQVLCERKP GRFVQLMDAM 360 NAQGLEVTNV NVTSYKTLVL NVFRVMVRSL LASCFDATAV IRKDSEVAVQ ADRVRDSLLQ 420 VTRESYGGGV WSSSSAAPVG SSIDVKLDPG DVKLDGIDGQ ASVAAEDHHG DYNHLLQYLA

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MVSNQPIWQT NSVTDQLPTG SYSSELGAGG PRTRLLVPVA GGLVELVASR YMAEEVQMAE  60
LVMAQCGVPE RAAAGKEGDA GALQAPQAWA EQPCFAWDDG AADPQAQRMY VVPPSLNLFD  120
AANPFLAVQQ ASSTVVDDAA AGGWQYAAAA AGSEPSSVAV PQEQLQVGRA GGGAESVSEG  180
SDLQGDPDLD DGDGDQSQVA GGKGGGKRQQ CKNLVAERRR RKKLNDRLYK LRSLVPNITK  240
MDRASILGDA IDYIVGLQNQ VKALQDELED PDAPADGVIP DVLLDHPPPA SLVGLENDES  300
PRTSQQQPLA GSKRSRTAEE EKGLDMEPQV EVRQVEANEF FLQVLCERKP GRFVQLMDAM  360
NAQGLEVTNV NVTSYKTLVL NVFRVMVRSL LASCFDATAV IRKDSEVAVQ ADRVRDSLLQ  420
VTRESYGGGV WSSSSAAPVG SSIDVKLDPG DVKLDGIDGQ ASVAAEDHHG DYNHLLQYLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	223	ERRRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269\|PubMed:17138695, ECO:0000269\|PubMed:19825565, ECO:0000269\|PubMed:23385589}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00097.1.g00580.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034326	1e-138	BT034326.1 Zea mays full-length cDNA clone ZM_BFc0007A07 mRNA, complete cds.
GenBank	BT042791	1e-138	BT042791.1 Zea mays full-length cDNA clone ZM_BFc0041J08 mRNA, complete cds.
GenBank	BT063010	1e-138	BT063010.2 Zea mays full-length cDNA clone ZM_BFc0017C04 mRNA, complete cds.
GenBank	BT063118	1e-138	BT063118.1 Zea mays full-length cDNA clone ZM_BFc0027J15 mRNA, complete cds.
GenBank	BT065717	1e-138	BT065717.1 Zea mays full-length cDNA clone ZM_BFc0042K04 mRNA, complete cds.
GenBank	BT067785	1e-138	BT067785.1 Zea mays full-length cDNA clone ZM_BFc0159F07 mRNA, complete cds.
GenBank	BT068836	1e-138	BT068836.1 Zea mays full-length cDNA clone ZM_BFc0079O03 mRNA, complete cds.
GenBank	BT088090	1e-138	BT088090.1 Zea mays full-length cDNA clone ZM_BFc0009P17 mRNA, complete cds.
GenBank	BT088299	1e-138	BT088299.1 Zea mays full-length cDNA clone ZM_BFc0123M15 mRNA, complete cds.
GenBank	EU972961	1e-138	EU972961.1 Zea mays clone 390787 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825508.1	0.0	transcription factor TDR-like
Refseq	XP_025825517.1	0.0	transcription factor TDR-like
Refseq	XP_025825524.1	0.0	transcription factor TDR-like
Refseq	XP_025825535.1	0.0	transcription factor TDR-like
Refseq	XP_025825544.1	0.0	transcription factor TDR-like
Refseq	XP_025825551.1	0.0	transcription factor TDR-like
Refseq	XP_025825560.1	0.0	transcription factor TDR-like
Swissprot	Q6YUS3	1e-130	TDR_ORYSJ; Transcription factor TDR
TrEMBL	A0A1E5UQU6	0.0	A0A1E5UQU6_9POAL; Transcription factor TDR
STRING	Si006199m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5530	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-51	bHLH family protein

Publications ? help Back to Top
Endo M, et al. High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol., 2009. 50(11): p. 1911-22 [PMID:19808807] Xu J,Wu M,He C [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae]. Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61 [PMID:20387456] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Zhang D, et al. OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol., 2010. 154(1): p. 149-62 [PMID:20610705] Senapati PK,Behera S Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock. Bioresour. Technol., 2012. 117: p. 99-106 [PMID:22613886] Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content]. Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7 [PMID:23285852] Li L, et al. An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development. Planta, 2015. 241(1): p. 157-66 [PMID:25236969] Yi J, et al. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol., 2016. 170(3): p. 1611-23 [PMID:26697896]