PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00068.1.g00520.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 336aa MW: 33404.2 Da PI: 8.0501 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.5 | 7e-39 | 25 | 83 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s Zpz_sc00068.1.g00520.1.sm.mk 25 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRS 83 57899****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 22 | 82 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-33 | 27 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.385 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 30 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAGAGAATAV QQPSAGAPGG ADPRAEALRC PRCDSANTKF CYYNNYSLSQ PRHFCKACKR 60 YWTRGGTLRN VPVGGGCRKN KRSRTSAAGI GAAGRTVSSA SAAAAAGTSS SAASALSLPP 120 PAGGPSMQSL TSALGLSGGA SLASLLLSNG GGGSGADHLG LFHAAMQSVV SDTSAYEMQQ 180 QTQVDHLLGL GYGGGGAGAQ IQLKPWLQDA GAGAGGIMDT FYAPLLSRSI VPGLEELHVK 240 AEAAGAGEPQ QAKAAAAWEQ NSWELSTPSS TSNIVASDGL MAAAASTMNN PAVSSTASTA 300 TAPPSSFMYW ANDGIGGAAA SWPDLANCGS SIATLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00068.1.g00520.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803596.1 | 1e-124 | dof zinc finger protein 2-like | ||||
TrEMBL | A0A3L6T9P7 | 1e-126 | A0A3L6T9P7_PANMI; Dof zinc finger protein DOF5.1-like | ||||
STRING | Traes_2BS_C94BD2E9F.1 | 1e-118 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8895 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 2e-37 | TARGET OF MONOPTEROS 6 |