PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00060.1.g00710.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 509aa MW: 55274 Da PI: 6.6832 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.5e-17 | 214 | 267 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k Zpz_sc00060.1.g00710.1.am.mk 214 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 267 4568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.7 | 8.5e-40 | 213 | 302 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrl+ eqv++LE++Fe +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L Zpz_sc00060.1.g00710.1.am.mk 213 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKADNDALV 293 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLree 90 +++++L++e Zpz_sc00060.1.g00710.1.am.mk 294 SHNKKLQAE 302 ******976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-18 | 195 | 270 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-19 | 207 | 271 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 209 | 269 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-17 | 212 | 273 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.0E-15 | 214 | 267 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.72E-17 | 214 | 270 | No hit | No description |
PRINTS | PR00031 | 3.3E-5 | 240 | 249 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 244 | 267 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.3E-5 | 249 | 265 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.2E-11 | 269 | 303 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MAERIISCAS AAAQVEGALL LHHGMAEGAT CGTDRSSYVV SSGHVHVPHA NARGPPDSSG 60 EGAEPCTLHV SLCVGLSLLA ATPIRPMHPA PDDAVGYSFL MPMASNGMAS SPPSFFPPNF 120 LLQMQQTPLD HDPQEHHHSH LHPPPLHHPH HNPFLPSSQC PSLQDFQGRA PMLGKRPMYG 180 ADVGAGDDLN GCGGGGDEAS KDELSDDGSQ AGEKKRRLNV EQVRTLEKNF ELGNKLEPER 240 KLQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKDYDALKR QLDAVKADND ALVSHNKKLQ 300 AERSQQKGCW KRRRWELAFH LRADVVLTAF VESCCSKAGA ASEWPATAPP GLCSFLPLSH 360 DATLTQSIYS SWLLRIVLAL KGGREAGSEL INLNKETEAS CSNRSENSSE INLDISRTPP 420 SEGPVDPPAH QHQHAGNGAG GMIPFYPSVG RSAGLDFDQL LHSSSGPKME QHGSGDGVQA 480 PEQTSFGNLL CCVDEPPPFW PWADHQHFH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 261 | 269 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00060.1.g00710.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC169375 | 1e-154 | AC169375.4 Sorghum bicolor clone SB_BBc0020O07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | A2XD08 | 2e-77 | HOX21_ORYSI; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | A3AEK5 | 1e-127 | A3AEK5_ORYSJ; Uncharacterized protein | ||||
STRING | TRIUR3_12807-P1 | 1e-125 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 2e-56 | HD-ZIP family protein |