PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00030.1.g00410.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 342aa    MW: 37014.8 Da    PI: 7.5228
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00030.1.g00410.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.13e-13267292126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +ktelC+ + +tG C+yG+ C+FaHg
  Zpz_sc00030.1.g00410.1.am.mk 267 FKTELCNKWEETGGCPYGGHCQFAHG 292
                                   79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-17261299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-10263298IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-8266293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901266294IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10267292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-10300330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-7301330IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4304331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338304332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MQEALVCPAN ADRLGSALEL KPFALGDQRL SSPPYFGAAG GDDALFRCSS PFSPSFGFSS  60
PSPHATSVSL SPSSSASLVD DGDDVAGTTD VTGHRLQLAR LALQYQEVAD RYELCLAHLA  120
EAADEAAALR RENAELRVAN SDLTRRLALL SGKQTAAVAI AEEIRRIRHG EQNAVPDAAE  180
RAPEKLTVLP KSISVRSKDY LKMNQTAKAP ATPVANNREP RASKPTMNNH TGSRMYVDAA  240
GGMKGEEAKE QQGAGGVELE VYNQGMFKTE LCNKWEETGG CPYGGHCQFA HGVAELRPVI  300
RHPRYKTQVC RMVLAGEPCP YGHRCHFRHT LTPAERLLLP RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-20267329466Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00030.1.g00410.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154781.11e-150zinc finger CCCH domain-containing protein 9-like isoform X2
SwissprotA2ZVY51e-123C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A287L6P61e-152A0A287L6P6_HORVV; Uncharacterized protein
STRINGMLOC_5666.31e-151(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.21e-48C3H family protein