PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00024.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 310aa    MW: 33527.8 Da    PI: 9.7372
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00024.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.61.4e-2255144186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtses 75 
                                   +Wt++e+laLiea+r+++e+lr+g+l++++W++v++++        +   ++ +qC++k+e+l+kry+++++++++r+++ 
  Zpz_sc00024.1.g00050.1.am.mk  55 CWTHEETLALIEAYRDRWESLRKGNLRAADWDDVAEAVtnrcgrFPTATPKTGVQCRHKIEKLRKRYRAERARSSGRSKG- 134
                                   8*************************************999988888899*************************98443. PP

                      trihelix  76 sstcpyfdqle 86 
                                     ++p++  l+
  Zpz_sc00024.1.g00050.1.am.mk 135 -PKWPFYPLLH 144
                                   .47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2254145No hitNo description
PROSITE profilePS500906.09856118IPR017877Myb-like domain
SMARTSM005954.6E-663151IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSSSSSDPAR DDAVSSPDLP PLGLPGAAAA AAAAAASSGG GMLGGGSGRR LPPPCWTHEE  60
TLALIEAYRD RWESLRKGNL RAADWDDVAE AVTNRCGRFP TATPKTGVQC RHKIEKLRKR  120
YRAERARSSG RSKGPKWPFY PLLHDLAGNG APDPSPNAII KIKTKGPAPP ASSPSPVSSP  180
SSEEEAVRSR SLHGLISNGG AESGLRFTIP KASRTRPAAT RVEKTRNEDD AESEAMSEVV  240
AALRAVGEGF VRMEERRLEL SLQLEKERME SEMKRTQAML DAQQLFLEAF LGKQQLPHKR  300
ARISPTMEED
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00024.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659928.11e-157trihelix transcription factor ASIL1
TrEMBLA0A060D1H21e-156A0A060D1H2_MAIZE; Trihelix transcription factor (Fragment)
TrEMBLA0A1X7YE921e-156A0A1X7YE92_MAIZE; Uncharacterized protein
TrEMBLA0A3L6DCX41e-156A0A3L6DCX4_MAIZE; Trihelix transcription factor ASIL2
STRINGGRMZM2G428470_P011e-157(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-22Trihelix family protein