PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00016.1.g01110.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 192aa    MW: 20691.8 Da    PI: 10.3358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00016.1.g01110.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-093983655
                                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                  ++r + RR ++ ++f +L+ l+P +      K s  ++Le++++Y+ksLq
  Zpz_sc00016.1.g01110.1.sm.mk 39 SKRRKTRRCKLSERFKTLQHLVPGC-----DKSSYNSTLEQTIQYMKSLQ 83
                                  6899********************9.....799999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.233382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-103788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-93787No hitNo description
PfamPF000104.1E-73983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-124097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-114391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MLETELQVEF VTGMRRQEQA RNNASLEDSI VTGSDGSSSK RRKTRRCKLS ERFKTLQHLV  60
PGCDKSSYNS TLEQTIQYMK SLQQQVQALA TTTTTTPSAP SSLPAPAAHP VAQPQYVHPG  120
PPVPLAPMVV LGPVPMVPLG LGRVLPLPHY PAPVVVMPAA ATPMYTATPD PRFARPDAGL  180
GRGSRSSIRG KE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00016.1.g01110.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442458.11e-27transcription factor APG
TrEMBLA0A1Z5R7F33e-26A0A1Z5R7F3_SORBI; Uncharacterized protein
STRINGSb08g020300.15e-27(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452