PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00015.1.g00420.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 307aa MW: 33002.5 Da PI: 4.9573

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00015.1.g00420.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.5e-11	235	275	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Zpz_sc00015.1.g00420.1.am.mk 235 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 275 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-14	225	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.021	225	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-12	230	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-11	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-12	234	279	No hit	No description
Pfam	PF00010	3.9E-8	235	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEIAEVGWTT EFDFSVHGEE ESEEMMAQLL GNSFPSSHGE GGHQELPWCY QAPGAYCDGN 60 GGSLVVGPAA YEGCYLSNSN AALGISSSDD LGGLVQDHGA ADFLNVFPNH SFSVYENGNG 120 SLNQVDLDDP GMSGVDSACA ANKRKHLVAD ELDHQTRARK RARKCEAAKG PKKAGQSGDE 180 NADATLITSG SPTSCCTSDD SIDSNASRDC ADARPRTKAR AGRGAATEPQ SIYARKRRER 240 INERLKILQN LVPNGTKVDI STMLEEAVHY VKFLQLQIKL LSSDDTWMFA PIAYNGMNVG 300 AHLNIAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	163	KRKHLVADELDHQTRARKRARK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00015.1.g00420.1.am.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY661659	8e-50	AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806266.1	1e-123	transcription factor bHLH139-like isoform X1
Refseq	XP_025806267.1	1e-123	transcription factor bHLH139-like isoform X1
Swissprot	Q84WK0	5e-47	BH085_ARATH; Transcription factor bHLH85
TrEMBL	K3Z8E3	1e-124	K3Z8E3_SETIT; Uncharacterized protein
STRING	Si022813m	1e-124	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4310	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27740.1	3e-43	root hair defective 6-like 4

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]