PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00007.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 317aa MW: 33490.5 Da PI: 9.6652 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.2 | 5.6e-38 | 32 | 128 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i Zpz_sc00007.1.g00020.1.am.mk 32 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHI 112 7***********************9989***************************************************** PP DUF260 81 lklqqqleqlkaelal 96 ++lqqq + +++e+a+ Zpz_sc00007.1.g00020.1.am.mk 113 FALQQQQRAVRKEAAK 128 *********9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.847 | 31 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-37 | 32 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MSSGGCTSTP PGGGGGGCPS GSGGPGGGGG GPCGACKFLR RKCVSGCIFA PYFDSEQGAA 60 HFAAVHKVFG ASNVSKLLLQ IPAHKRLDAV VTICYEAQAR LRDPVYGCVA HIFALQQQQR 120 AVRKEAAKPG TLLRAGTRRI LRRRIVIPAV RCLPPPVAYY YAVVHLGLRI VLGWWCQRQS 180 LVVNLQAELT YLQAHLATLE LPSPPPLPAP PQMPVPAPFN IADLPSATNV PTTVDLSALF 240 DTPPQAHQWA SVQQQHHHQL RQPTMTSYGA SVRGGHGMAE SSSAGGGGDL QALARELLDR 300 QRSGVKLESP PPPPPHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-35 | 28 | 125 | 7 | 103 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-35 | 28 | 125 | 7 | 103 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00007.1.g00020.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061431 | 1e-132 | BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132370.1 | 3e-74 | uncharacterized protein LOC100193815 | ||||
TrEMBL | A0A0E0GJP4 | 5e-87 | A0A0E0GJP4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G11070.1 | 8e-88 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP42174 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 3e-50 | LOB domain-containing protein 18 |