PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma98g00210.1
Common NameZOSMA_98G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 348aa    MW: 37691.7 Da    PI: 9.9226
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma98g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.36.5e-1640133270
         trihelix   2 WtkqevlaLiearremeerlrrgk.........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                      Wt +e+l+Li+a+r ++er   +                          +++ +W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e k
  Zosma98g00210.1  40 WTLHETLVLITAKRLDDERRALSPkpnltnnpsssgntaspppqcgggrSAELRWKWVENYCWRNGCLRSQNQCNDKWDNLLRDYKKVRHYEMK 133
                      **************66666664433445555666667777888888888***************************************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.99332121IPR017877Myb-like domain
PfamPF138372.2E-1039131No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSSSSPPTSH TPLLPSHHLL PPPTSSSTSL LPREYRKGNW TLHETLVLIT AKRLDDERRA  60
LSPKPNLTNN PSSSGNTASP PPQCGGGRSA ELRWKWVENY CWRNGCLRSQ NQCNDKWDNL  120
LRDYKKVRHY EMKLVTLLPK DCKNEGAGVS GGSDLPPNNN NDGSYWKMEK HERKERNLPA  180
NLVAEVFHAL TDVLNRRNSC KGGQHHNAIC GSNSNINPLQ LTISPRRPSL SIMPVVAAAS  240
MAFTPAVPPS QSTSTLAAFG HPPLSTIRAP TPVPPMKTHP PEPSVLGIRM ILSRSLAACL  300
KSQCLCVQTG SSGLESDKRC INAGNSSSGM RGEARETAPG GYGTGRT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NJE80.0A0A0K9NJE8_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.15e-46Trihelix family protein