PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma970g00020.1

Common Name

ZOSMA_970G00020

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

GRF

Protein Properties

Length: 496aa MW: 53932 Da PI: 7.7412

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma970g00020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.6e-24	225	268	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Zosma970g00020.1 225 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVE 268 79***************************************998 PP
2	QLQ	51.4	3.3e-18	161	197	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +aFT++Q+ +L++Q+++yKy+ an+P+Pp Ll i+k Zosma970g00020.1 161 GAFTPSQWVELEHQVMIYKYIDANAPIPPTLLISIKK 197 59******************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.3E-9	161	197	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.377	162	197	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.5E-13	162	195	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	225	269	IPR014977	WRC domain
Pfam	PF08879	5.6E-21	226	268	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008285	Biological Process	negative regulation of cell proliferation
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MDTSSIDNFN GNGLFSSASV SSENSDSTRH NLLFGSSVSH TLKQGRNAGV VTEEQDWRCP 60 KMGTIERKRL EMATEKENHS LFSSSSFLRT TSNTTHSLFP DGQQMLSFSS PKPDSLVPPY 120 YNHLLLPPSC CCVSTPVAST FARNTGPNMN VHGGVLAGVR GAFTPSQWVE LEHQVMIYKY 180 IDANAPIPPT LLISIKKTQN PFGSLTPPTA YGWGSCQLGF SGNSDPEPGR CRRTDGKKWR 240 CSRDAVADQK YCERHMNRGR HRSRKPVEGH TGQAKTMPII APSPSASSIQ PPSHHTRILL 300 NKDDSVAKDD GKVAEASIPK QYNPFEQQQS TNRADLVLSA AYNYDYNSYI DEGWPEENQS 360 DRTELSITIP TTCCSEKNSN LSLSPPLKKL KTQETNPISM NHDKQGTWAP VSWGASMGGP 420 LGEVLNNSVT ANINSFGLNM IDCWDSSPTG VLQKNSFGSH SSSAGSSPRA SAAAADTITT 480 TAVAAHRRDD LSTWV*

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MDTSSIDNFN GNGLFSSASV SSENSDSTRH NLLFGSSVSH TLKQGRNAGV VTEEQDWRCP  60
KMGTIERKRL EMATEKENHS LFSSSSFLRT TSNTTHSLFP DGQQMLSFSS PKPDSLVPPY  120
YNHLLLPPSC CCVSTPVAST FARNTGPNMN VHGGVLAGVR GAFTPSQWVE LEHQVMIYKY  180
IDANAPIPPT LLISIKKTQN PFGSLTPPTA YGWGSCQLGF SGNSDPEPGR CRRTDGKKWR  240
CSRDAVADQK YCERHMNRGR HRSRKPVEGH TGQAKTMPII APSPSASSIQ PPSHHTRILL  300
NKDDSVAKDD GKVAEASIPK QYNPFEQQQS TNRADLVLSA AYNYDYNSYI DEGWPEENQS  360
DRTELSITIP TTCCSEKNSN LSLSPPLKKL KTQETNPISM NHDKQGTWAP VSWGASMGGP  420
LGEVLNNSVT ANINSFGLNM IDCWDSSPTG VLQKNSFGSH SSSAGSSPRA SAAAADTITT  480
TAVAAHRRDD LSTWV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:21036927}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM473368	4e-31	AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008790288.1	3e-97	growth-regulating factor 6-like
Swissprot	Q8L8A8	2e-69	GRF2_ARATH; Growth-regulating factor 2
TrEMBL	A0A0K9NI72	0.0	A0A0K9NI72_ZOSMR; Growth-regulating factor 1
STRING	XP_008790288.1	1e-96	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-67	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Zosma970g00020.1

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]