PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma85g00210.1
Common NameZOSMA_85G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 196aa    MW: 22568.3 Da    PI: 6.6443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma85g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-063179254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +  + erE+  Rd++N+ f++L  ++ +      + + Ka+iL +A++ +++L
  Zosma85g00210.1 31 KIHKAEREKLKRDHLNDLFFKLGHVVEPT----RQNNGKASILGEATKLLRDL 79
                     667889*****************999996....58899999******999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-122993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6042979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-93099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-43179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVSGDNTTGP ENSDDSRSLP DRKSQIKVPR KIHKAEREKL KRDHLNDLFF KLGHVVEPTR  60
QNNGKASILG EATKLLRDLV VQVESLKREN VTLLSESRYV TQEKNELKDE TIVLMSEIEK  120
MRSAQSQSHE QQPMYVISPT SQDTHVRRPH PRRATPLDPW QHRILTRATE LTGEEEEEEE  180
REQAGKMSRE LQLLD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020677790.14e-47transcription factor BHLH062
RefseqXP_020677792.14e-47transcription factor BHLH062
TrEMBLA0A0K9NL021e-139A0A0K9NL02_ZOSMR; Uncharacterized protein
STRINGXP_008807714.13e-44(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-35bHLH family protein