PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma76g00520.1
Common NameZOSMA_76G00520
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 519aa    MW: 56130.6 Da    PI: 10.1263
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma76g00520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.96.3e-19158257187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikeg...ekkrt....sessstcpy 81 
                      +W+ +e+ aLi+++++++ +lrrg+lk+++W++v++++        +  +++++qC++k e+l+kry+ ++++   +++rt     +ssst+ +
  Zosma76g00520.1 158 CWSVEETVALIDGYQDKWYTLRRGNLKANHWQDVADFVtsrcanLPGSSHKTAVQCRHKVEKLRKRYRSERQRclrNQNRTsnsrTNSSSTWYF 251
                      7*************************************99999889999*******************99874333333321112567889*** PP

         trihelix  82 fdqlea 87 
                      f++++a
  Zosma76g00520.1 252 FKKMDA 257
                      ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-18157258No hitNo description
SMARTSM005953.0E-4166263IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MVSRSIHPFI HLTTTRSYSS ALIPKCHNAN THNYFQTSSS ATVTATATTA TTSPHLQNVM  60
AAVLSSPIQS SPSTSTSPSI SSSPSSSSPP PPHSPSLSPS NPNSLNTTPD PNPNTAPTVA  120
LPPPAAIALP QHPPPQSQPS SNPPPSAPTS TRRVPPPCWS VEETVALIDG YQDKWYTLRR  180
GNLKANHWQD VADFVTSRCA NLPGSSHKTA VQCRHKVEKL RKRYRSERQR CLRNQNRTSN  240
SRTNSSSTWY FFKKMDAMEL GPISNAPNRN HTSNNGNILS SASNRDISGG YSNAIPTSVP  300
SRHVPPQSTS PSDASSNDSD DDSEGDVGIG NNNINVRNLH GLVSNGSGMK FKIPKAVRSR  360
GGMPMLRSEG GGSMPVMYPR SSVYPSSSNN QASVGLGPGG SSRFTRGVYT SSGMRSEGLS  420
GMEEMRGKMD KKRGRDGVGR SDGGMEEIVS AVRMLGDGFM RMEQMKMDME KEIHNMRMEM  480
ELKHTEMILD TQRQIVDTFL NGFLDEEKKS KKANLGDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NP110.0A0A0K9NP11_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-31Trihelix family protein