PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma72g00420.1
Common NameZOSMA_72G00420
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family BBR-BPC
Protein Properties Length: 348aa    MW: 38992 Da    PI: 9.9987
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma72g00420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind351.22.4e-10713471301
        GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 
                      mdd+++re  r+k+ yy+    + +  + +++lms+i erd++++ern+a+sekkaa+aerd aflqrd+a++ern+a+ erd++++al+++++
  Zosma72g00420.1   1 MDDSAHREngRHKSeYYKGLhgQWVMPQHQMKLMSIIVERDNAVQERNVAMSEKKAALAERDLAFLQRDTAITERNNAIAERDSAIAALQYARE 94 
                      9999999999****99994335667778899**************************************************************9 PP

        GAGA_bind  90 sla.....salpvgvqvlsgtksidslqqlse......pqledsave..lreeeklealpieeaaeeakekkkkkkrqr.akkpkekkakkkkk 169
                      +l+     +++ +g+++ + t++ ++ +  s+      pql+d +++   re+++++a+pi++ +++  + k++ + ++  +k ++  +kk+k+
  Zosma72g00420.1  95 NLNvnndgHVCQSGCSAPKYTTNHHHNHASSHlnsslpPQLSDVPYNntPREMHITNAYPISSIPDNGMKPKRCGRPRKdVNKSQSVPSKKPKR 188
                      99999999999999999999999999999888899**********99756899***************99999986544144555556667777 PP

        GAGA_bind 170 ksekskkkvkkesader...........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236
                      +++++ kk+k e  +++                           + +e++ +dl+ln+v++De+t+ vP CsCtG+l+qCYkWGnGGWqSaCCt
  Zosma72g00420.1 189 TPTSTMKKKKGEDLNKQvtiakspwrgqqvlfsnsedqnkmvlsAEHEWRVLDLGLNQVTFDETTMAVPGCSCTGSLKQCYKWGNGGWQSACCT 282
                      666665555555554447899999*******************999************************************************ PP

        GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      tt+S++PLPv ++rr+aR++grKmS+++f+klL++La+eG+dls+p+DLkdhWAkHGtn+++ti+
  Zosma72g00420.1 283 TTLSQHPLPVIPNRRHARVGGRKMSGSVFTKLLSRLAQEGHDLSTPLDLKDHWAKHGTNRYITIK 347
                      ****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.2E-1321347IPR010409GAGA-binding transcriptional activator
PfamPF062177.8E-871347IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDDSAHRENG RHKSEYYKGL HGQWVMPQHQ MKLMSIIVER DNAVQERNVA MSEKKAALAE  60
RDLAFLQRDT AITERNNAIA ERDSAIAALQ YARENLNVNN DGHVCQSGCS APKYTTNHHH  120
NHASSHLNSS LPPQLSDVPY NNTPREMHIT NAYPISSIPD NGMKPKRCGR PRKDVNKSQS  180
VPSKKPKRTP TSTMKKKKGE DLNKQVTIAK SPWRGQQVLF SNSEDQNKMV LSAEHEWRVL  240
DLGLNQVTFD ETTMAVPGCS CTGSLKQCYK WGNGGWQSAC CTTTLSQHPL PVIPNRRHAR  300
VGGRKMSGSV FTKLLSRLAQ EGHDLSTPLD LKDHWAKHGT NRYITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020261932.11e-140barley B recombinant-like protein D
RefseqXP_020261933.11e-140barley B recombinant-like protein D
SwissprotQ5VSA81e-119BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A0K9NSA60.0A0A0K9NSA6_ZOSMR; GAGA-binding transcriptional activator
STRINGXP_008776328.11e-136(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-113basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]