PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma71g00200.1 | ||||||||
Common Name | ZOSMA_71G00200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 178aa MW: 20363.9 Da PI: 9.3364 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53 | 1.2e-16 | 50 | 143 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY YA +GF+ ++++s+k + i + +fvCsk+ +++++ ++ +k +r++ + r +Cka+++ k ++ + +w+v+ ++++H+Hel Zosma71g00200.1 50 QFYYYYAGYAGFDHVRRYSSKL-IDSVIQSMKFVCSKQRESTKKMDTdlveYHKISRKSHNVRESCKAQITFKIDTgSTNWRVHIFVEHHTHEL 142 6*************99999998.8888************9999988889887888999999***************9****************9 PP FAR1 90 a 90 a Zosma71g00200.1 143 A 143 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-13 | 50 | 143 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDDDVQTSIS IDSFSRNTNA LSIVNSNDTS PPPPIPYVGQ IFPDLESGRQ FYYYYAGYAG 60 FDHVRRYSSK LIDSVIQSMK FVCSKQREST KKMDTDLVEY HKISRKSHNV RESCKAQITF 120 KIDTGSTNWR VHIFVEHHTH ELATLKKRCF LRVNRHMSST SRGLLDSLNS AHIQPSQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NQA3 | 1e-130 | A0A0K9NQA3_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1424 | 4 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-09 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma71g00200.1 |