PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma69g00790.1 | ||||||||
Common Name | ZOSMA_69G00790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 445aa MW: 49503.5 Da PI: 4.9392 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.7e-11 | 241 | 285 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + ++ErrRR+r+N+++ Lr+++P+ + K++ a+iL A++Y+ +L Zosma69g00790.1 241 NLMAERRRRKRLNDKLYLLRSIVPNiS------KMDRASILGDAINYVYEL 285 5589*********************66......**************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.5E-17 | 235 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.523 | 236 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-13 | 242 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-9 | 242 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-15 | 243 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.36E-11 | 243 | 289 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MKNTPIIIFF FFLLPNINIS TYLPHQLSFF FFFLLPDIKN ISYLSIMSLP TTTNSSDDLR 60 YLQGGFPSFP KTVLQQQEAE GGGDDSWYAP PAPLVFVDSS SCTTSPVIKS FDRKLRVSIP 120 GCGSGLLGAD ISCGVSEGSG RWWNRTSKII LRPLEDAETT IFQKRSRTAA NAVEGEFKSS 180 GFNYEDSSDG VSTAMEKEIS VVKEDDTEEN DGDEDGYYDE DDDYEKGNEN EKKKKKKPAK 240 NLMAERRRRK RLNDKLYLLR SIVPNISKMD RASILGDAIN YVYELERKVN DLRNDLRSLS 300 PTPTPTSTPS SSDFNAGSSS VNNSEPPPPF HSSGQIKDEI TFSTPQSHNQ LPTIDITVKE 360 ENGKLNIHIY SGVLKLPPTF LPSTMQALDD MDLDIQQAVI NCHNGFVLDI YRAQKCNSWV 420 RPNDIKARLL DCATASGFNG SSSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-14 | 235 | 289 | 3 | 57 | Transcription factor MYC2 |
5gnj_B | 1e-14 | 235 | 289 | 3 | 57 | Transcription factor MYC2 |
5gnj_E | 1e-14 | 235 | 289 | 3 | 57 | Transcription factor MYC2 |
5gnj_F | 1e-14 | 235 | 289 | 3 | 57 | Transcription factor MYC2 |
5gnj_G | 1e-14 | 235 | 289 | 3 | 57 | Transcription factor MYC2 |
5gnj_I | 1e-14 | 235 | 289 | 3 | 57 | Transcription factor MYC2 |
5gnj_M | 1e-14 | 235 | 289 | 3 | 57 | Transcription factor MYC2 |
5gnj_N | 1e-14 | 235 | 289 | 3 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 251 | KKKKPAKNLMAERRRRKRL |
2 | 234 | 250 | KKKPAKNLMAERRRRKR |
3 | 244 | 251 | ERRRRKRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NRI2 | 0.0 | A0A0K9NRI2_ZOSMR; Transcription factor SCREAM2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1646 | 37 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 3e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma69g00790.1 |