PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma54g00490.1
Common NameZOSMA_54G00490
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 279aa    MW: 31163.8 Da    PI: 9.1991
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma54g00490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-193482355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr ++ +g+++AeIrdp     + +r++lg+fg+ae+Aa+a++aa+++l+g
  Zosma54g00490.1 34 FRGVRKRP-WGKFAAEIRDPI----KkTRVWLGTFGSAEDAARAYDAAARSLRG 82
                     8*******.**********72....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.91E-183390No hitNo description
SMARTSM003803.3E-363396IPR001471AP2/ERF domain
PROSITE profilePS5103222.9853390IPR001471AP2/ERF domain
PfamPF008476.7E-133382IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-313491IPR001471AP2/ERF domain
PRINTSPR003677.2E-103445IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-213491IPR016177DNA-binding domain
PRINTSPR003677.2E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MRKEGRTMGP ATMGDGTGVN TDAGINELIQ DIRFRGVRKR PWGKFAAEIR DPIKKTRVWL  60
GTFGSAEDAA RAYDAAARSL RGPKAKTNFP STLIQPPLIF RHHHQQQHRH QPPHTIPIPS  120
HNHITHHPFT SSYHHHHHHL QQISEPLVRP TTSSHSSTVE SFSGPRSMQI SILPASSHGN  180
NLHQQRMATT TPMGVVVGDD CRSDCGSSSS VVDDDDADVA SAHINHHQHH QQQQQQQHLL  240
EQLATTTHKH QKMPPFSFDL NFPPPDDDLY LKTTALRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-213490663ATERF1
3gcc_A2e-213490663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NWV70.0A0A0K9NWV7_ZOSMR; Ethylene-responsive transcription factor 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-24ethylene responsive element binding factor 3