PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma51g00500.1

Common Name

ZOSMA_51G00500

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 477aa MW: 54208.2 Da PI: 8.3747

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma51g00500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.8	1.7e-13	192	284	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+ +GFsvr ++k+ + ++ +++++ Csk+g+++ t+ +rr++ ++r+ C a++k k+ + +++w+ +++ HnH+++ Zosma51g00500.1 192 YYDFASVMGFSVRLGSTKNVidkgSGQKILVMKRLLCSKQGSPSLIFPPTNGNRRKNGVSRCCCLASIKFKRIDrSDNWVTDTVIFYHNHPFT 284 999*********999988776566677899********9999999******************99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-10	192	284	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MKKIKSLSIQ HRFCHIVLFT IHLSIVGFAT LYNLPISLFF VFLPQRLLLQ SPNTSSSFFS 60 ILSRSSNPSS GFIYLPPCEY KTNVNPSACS DNVFTPLDDD VICSTFFYSE FVKSTSDDIT 120 QSSAEILPTS AILGYGTDRT PDNYCKRKYS SPAHDHSSPD HRNASSSFSQ CNKPCPVVGQ 180 VFPSYELVVQ SYYDFASVMG FSVRLGSTKN VIDKGSGQKI LVMKRLLCSK QGSPSLIFPP 240 TNGNRRKNGV SRCCCLASIK FKRIDRSDNW VTDTVIFYHN HPFTSPSKIR YLPINRSISQ 300 ISKLLFSSLA EVNVPVSQQA TYFSNQLGGV QNMGCMKMDI NNMVCDDRID LKNYDVDLIV 360 EEFEMNKSEN EQFFYDLVKD DEGRLKHLFW ADPTMIENYK LFGNSVTFDT TYKINVYSMV 420 FGMFCGVNHH RKTTIFGSAF VRYFLFTFFL KLPLSLTLII FFCNNFYSII FCYCVQ*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MKKIKSLSIQ HRFCHIVLFT IHLSIVGFAT LYNLPISLFF VFLPQRLLLQ SPNTSSSFFS  60
ILSRSSNPSS GFIYLPPCEY KTNVNPSACS DNVFTPLDDD VICSTFFYSE FVKSTSDDIT  120
QSSAEILPTS AILGYGTDRT PDNYCKRKYS SPAHDHSSPD HRNASSSFSQ CNKPCPVVGQ  180
VFPSYELVVQ SYYDFASVMG FSVRLGSTKN VIDKGSGQKI LVMKRLLCSK QGSPSLIFPP  240
TNGNRRKNGV SRCCCLASIK FKRIDRSDNW VTDTVIFYHN HPFTSPSKIR YLPINRSISQ  300
ISKLLFSSLA EVNVPVSQQA TYFSNQLGGV QNMGCMKMDI NNMVCDDRID LKNYDVDLIV  360
EEFEMNKSEN EQFFYDLVKD DEGRLKHLFW ADPTMIENYK LFGNSVTFDT TYKINVYSMV  420
FGMFCGVNHH RKTTIFGSAF VRYFLFTFFL KLPLSLTLII FFCNNFYSII FCYCVQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NXU2	0.0	A0A0K9NXU2_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-31	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma51g00500.1