PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma3g01410.1
Common NameZOSMA_3G01410
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 434aa    MW: 48652.8 Da    PI: 9.4057
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma3g01410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.81.5e-12197289390
            FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     Y ++A+++ Fsvr  ++++     + ++  +++++ Csk+g+++    +t+ +r ++ + r++C a++k k+ + +++w+ + ++l+HnH+++
  Zosma3g01410.1 197 YYDFASSTEFSVRLGSTHNIldkqTGHKILVMKKLLCSKQGSPNLILPSTNGNRLKNGVFRCDCLASIKFKRIDrSDQWVTHFVNLDHNHSFT 289
                     899**********9998876664244556789*************9999999*********************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-9197289IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MASPTSFCNQ HRPTSLQVSP KTNSIFVTPP PYRSQQFTYD HTNTSCNVSL KFHFNFSQCH  60
TNANTKPSNV GFSTPLDSHA PASNIVQSDF VQCTSAEMKE SSANMSYGTA KIPNKNVQSP  120
SADIVDSSVQ IPAHSDNASY GTAKTPDNHL KRKFSSTGGY PTSPNNENRS SGYSQSSKLF  180
PIVGKVFPSY EMVVRSYYDF ASSTEFSVRL GSTHNILDKQ TGHKILVMKK LLCSKQGSPN  240
LILPSTNGNR LKNGVFRCDC LASIKFKRID RSDQWVTHFV NLDHNHSFTT PTKIRYLPIN  300
RSISYTSKIL FSSLANVNVP ISQQAAYFSN QLGGPENMGC MTLGINNMVR DDRIDLKNYD  360
VDLIVEDFEM KKLENAQFFY DLVKDDAGRL KHLFWADPTM IENYKLFGDS VTFNTTYKTN  420
VYVKKLTLIQ RRD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562141e-122AC256214.1 Zostera marina clone XTP02-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P3V60.0A0A0K9P3V6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-22FAR1-related sequence 5