PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma3g00840.1
Common NameZOSMA_3G00840
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 472aa    MW: 52766.1 Da    PI: 5.7769
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma3g00840.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-06222243223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C +Cgk F+r  nL+ H+r H
  Zosma3g00840.1 222 FCLICGKGFKRDANLRMHMRGH 243
                     5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.07E-5219246No hitNo description
PROSITE profilePS5015711.552221248IPR007087Zinc finger, C2H2
SMARTSM003550.012221243IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-5223272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035557270303IPR015880Zinc finger, C2H2-like
SMARTSM0035521308330IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDHEPRKISK SLLEPSIPAI SNTNSVRFDI PFGSCSTEDF PDYGNHQSRE STPLTNTTNQ  60
DPRLMLNNLT FLEQKIHQVQ DIVRSIIERE GRHTLQPDEL AAQHQLVTAD LTSIIIQLIS  120
TAGTLLPSLQ NTLLSSTNQP SSAAACQPQT VSNNLQQTET FQMETSNING IVEMVEPVLL  180
PIGEDHDVKD CEDHGDCENL LPGSYEVLQL EKEEILASHT HFCLICGKGF KRDANLRMHM  240
RGHGDEYKTP AALAKPGKDS SSEVVIIKRY SCPFVGCKRN KEHKKFQPLK TIPCVKNHYK  300
RSHCDKSYTC SRCNSKKFSV IADLKTHEKH CGRDKWLCSC GTSFSRKDKL FGHVSLFQGH  360
TPALPMAMDE TKVSETSTQM PTSNEIMNDV CGGFCNIDDI DFLDIKGIDE EPSFYSSVDF  420
DSFNFGGIPE YTDNNASQLS SSYQVSENSR PFMPNDYDNR TINDSNSHLL S*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020246003.11e-172zinc finger protein STOP1 homolog
SwissprotQ943I61e-156STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0K9P3Q80.0A0A0K9P3Q8_ZOSMR; Uncharacterized protein
STRINGXP_008795575.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-148C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]