PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma38g00660.1

Common Name

ZOSMA_38G00660

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 381aa MW: 43513.2 Da PI: 10.1115

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma38g00660.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.1	7.4e-16	52	150	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...........rergferspkqCkekwenlnkrykkikege.kkr.tsessstcpy 81 +Wt++e laLi+ +re++ + +l++p+W+ev++ + + +++++qC++k+e+++kry+ e++ + +s+++st++y Zosma38g00660.1 52 CWTHEENLALIDSYREKWFANHFMNLRAPHWQEVADELarrcqhmlnsdPPTTTSKTAIQCRHKMEKVRKRYRMDWERSlHLHpNSPAHSTWVY 145 8********************************************9999999***************76554414455678889 PP trihelix 82 fdqle 86 f++++ Zosma38g00660.1 146 FKKMD 150 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.9E-16	51	152	No hit	No description
PROSITE profile	PS50090	6.005	53	120	IPR017877	Myb-like domain
SMART	SM00595	4.4E-4	60	157	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MSTTTFSPPN PNPNTEGILT LALPAPMAST QTVVPTPTPP SVVRKRSFPA PCWTHEENLA 60 LIDSYREKWF ANHFMNLRAP HWQEVADELA RRCQHMLNSD PPTTTSKTAI QCRHKMEKVR 120 KRYRMDWERS LHLHPNSPAH STWVYFKKMD DMNNVARSSS SMGNQRSSSS KKAPLPAVVM 180 KTPSSSSRDL SETSSEEEEE EEEQQPYGGE NIRMGNGTGR RRGWASQPQS QPTSGYRFKI 240 PKMGREKVGI PLNSVSGGRL FGYGNSDFNE RRRDRERDRE RKSRRYEYDE KDELRNGNCG 300 PSVMGEIALA VRTFGEGYMK MEKLKMEMTR DFEKVKMDME LKRTKMILES HQQIVDAFVA 360 GLVGSKNKNK RMRISPDSSL *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MSTTTFSPPN PNPNTEGILT LALPAPMAST QTVVPTPTPP SVVRKRSFPA PCWTHEENLA  60
LIDSYREKWF ANHFMNLRAP HWQEVADELA RRCQHMLNSD PPTTTSKTAI QCRHKMEKVR  120
KRYRMDWERS LHLHPNSPAH STWVYFKKMD DMNNVARSSS SMGNQRSSSS KKAPLPAVVM  180
KTPSSSSRDL SETSSEEEEE EEEQQPYGGE NIRMGNGTGR RRGWASQPQS QPTSGYRFKI  240
PKMGREKVGI PLNSVSGGRL FGYGNSDFNE RRRDRERDRE RKSRRYEYDE KDELRNGNCG  300
PSVMGEIALA VRTFGEGYMK MEKLKMEMTR DFEKVKMDME LKRTKMILES HQQIVDAFVA  360
GLVGSKNKNK RMRISPDSSL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	280	RRRDRERDRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P6V1	0.0	A0A0K9P6V1_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5689	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-28	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Zosma38g00660.1