PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma323g00110.1 | ||||||||
Common Name | ZOSMA_323G00110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | E2F/DP | ||||||||
Protein Properties | Length: 453aa MW: 50064.7 Da PI: 4.5003 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 85 | 6e-27 | 145 | 210 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++ll+++++g+++ln++a++L dv ++RRiYDi+NVLe+++liekk kn+irwkg Zosma323g00110.1 145 RYDSSLGLLTKKFINLLKHADDGNLDLNKAATTL---DV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 210 6899******************************...**..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.5E-28 | 142 | 211 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.8E-17 | 145 | 208 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.0E-33 | 145 | 210 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 4.9E-24 | 147 | 210 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 2.70E-41 | 221 | 326 | No hit | No description |
SuperFamily | SSF144074 | 7.85E-31 | 222 | 326 | No hit | No description |
Pfam | PF16421 | 1.4E-29 | 226 | 324 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0051446 | Biological Process | positive regulation of meiotic cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MSAAGREVPL PMRHGQTPGR ILQRDIPFPT STPSFFNPDD YHCFSSVRTC AAAGTDDTTE 60 MLIVRTPLKT KSVHQDSEIV ESSEWATSSG YAALNNPLMT PVSGKTEKIT SRSKTGKGMR 120 SLPQTPSANI GSPSCNTSTP AGTCRYDSSL GLLTKKFINL LKHADDGNLD LNKAATTLDV 180 QKRRIYDITN VLEGIGLIEK KLKNRIRWKG HNVLRPIDVD EDVAVLQADV ENLNTKEREI 240 DEQISEAKAR LTELTENENN QRWLFVSEED IKGLPCFQNE TLIAIKAPHG TTLEVPDPDE 300 ADYSQRRYRI VVRSTMGSID VYLVSQFEKN FEEMAAIEAP QSLPPAIPDL GEPGEESNEN 360 RTPLEVEGDN NQRIMRIVPS DVDTESDYWL LSDPGVSITD LWKADSEVPW DGMDTEEFPL 420 TSVSTSQPPT QTQRIEGCPG NSNNNNNSNT PS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 3e-23 | 140 | 210 | 1 | 73 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017700050.1 | 1e-174 | transcription factor E2FB-like | ||||
Swissprot | Q9FNY0 | 1e-120 | E2FA_ARATH; Transcription factor E2FA | ||||
TrEMBL | A0A0K9PB17 | 0.0 | A0A0K9PB17_ZOSMR; Transcription factor (E2F) | ||||
STRING | XP_010246568.1 | 1e-169 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.2 | 1e-121 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Zosma323g00110.1 |
Publications ? help Back to Top | |||
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