PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma2g00480.1
Common NameZOSMA_2G00480
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 482aa    MW: 53503.6 Da    PI: 9.2165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma2g00480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.81.7e-17197245254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ L
  Zosma2g00480.1 197 RSKHSATEQRRRSKINDRFQILRDLIPHS----DQKRDKASFLLEVIEYIQFL 245
                     889*************************9....9*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.9E-22194262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.028195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-18195262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-14197250No hitNo description
PfamPF000106.2E-15197245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEIQDSKKAT THDFLSLYKE TSGFTQIDPT LSPQEIHRKK TQDFLQPFEE KRTVVTPATF  60
KQLSTVKLEP SEVQGTGGAF VLWGGEESVP ARIITGARRH QQQQKQKQWS SSSPSPPCTA  120
PSIRNSSLGS ILSGRKSTGQ ERRSMDTGSK SGKGFTDEDE DDEVVGRREA SSQKDLTVKI  180
DRKTHQNNND QEATTPRSKH SATEQRRRSK INDRFQILRD LIPHSDQKRD KASFLLEVIE  240
YIQFLKEKVE KSESGYPVWN QETIKMIPWK NNQVPTEIIA EPSHALRNGP SPPKLVISGD  300
NIIPAIPVPL ANNHAQLESE NLNSGLAHKV ASLPPPLQQY GRSRGFVNLP HQRFIPESEN  360
VASQSQSRRL RQTSGYATEI LSEHDLMIDE GTISISSAYS QGILNALTEA LKNTGLDLSQ  420
ASVSVNINLG KRAFNKPVIN QKDPSVGNET FGHSSHMVSS TIEETEHANS NKRHKPGTSH  480
C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PCS10.0A0A0K9PCS1_ZOSMR; Uncharacterized protein
STRINGXP_008797597.11e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.19e-56BES1-interacting Myc-like protein 2