PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma289g00260.1 | ||||||||
Common Name | ZOSMA_289G00260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | G2-like | ||||||||
Protein Properties | Length: 227aa MW: 25898.6 Da PI: 6.9491 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.6 | 3.6e-30 | 27 | 80 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rlrWt++LH++F++av++LGG+ekAtPk+++ +m+v+gL l+h+kSHLQkYRl Zosma289g00260.1 27 RRLRWTKQLHDQFIDAVTHLGGAEKATPKSVMLMMDVPGLNLYHLKSHLQKYRL 80 59***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.605 | 23 | 83 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.2E-20 | 27 | 81 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 27 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.91E-14 | 27 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.4E-6 | 28 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.7E-11 | 119 | 151 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MQKKIRVVQT SMDGGSNIHP PPDFKLRRLR WTKQLHDQFI DAVTHLGGAE KATPKSVMLM 60 MDVPGLNLYH LKSHLQKYRL GQSREQRLLP DCRKQVANYI KPAEISSLDF RLQLNESMTK 120 MQTEIEVQRH LQLRIEAQAK YLQTVLKKAE ESLAAGTDSV LIDSCLTSLE RKEEDNDDDD 180 GEVEEDNLCK LKIGASCSSI DQSPHPLFIE TQLGKHKFQY ELDLNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020114299.1 | 4e-42 | myb-related protein 2-like | ||||
Refseq | XP_020114307.1 | 4e-42 | myb-related protein 2-like | ||||
Swissprot | F4I274 | 3e-33 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A0K9PEZ0 | 1e-167 | A0A0K9PEZ0_ZOSMR; Myb family transcription factor | ||||
STRING | XP_008783889.1 | 5e-39 | (Phoenix dactylifera) | ||||
STRING | XP_008802581.1 | 5e-39 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16835 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 6e-35 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma289g00260.1 |
Publications ? help Back to Top | |||
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