PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma246g00310.1
Common NameZOSMA_246G00310
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 498aa    MW: 57312.3 Da    PI: 7.676
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma246g00310.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48.1e-11281021597
                       -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        + +p  f+ +   ++e+    ++ d+ g sW +k+  r++   +++ +GWk+F+k  +L++g +++F ++g+++f   v +f
  Zosma246g00310.1  28 KMDIPPAFIWNL--IPEK--IAKVWDSLGHSWLFKI--RGTHPNFYFDEGWKKFAKTFNLEVGYMLLFCYEGNMNF--SVIIF 102
                       368888888544..3333..68999***********..***99*****************************9999..66666 PP
2B346.37.8e-15269354491
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                       +l+ps+   +  l++p +f e+ g++ e   tl l+d++++ We +l+   +++r + ++GWkeF+  n+Lk gD + Fk+ ++ ++ +
  Zosma246g00310.1 269 TLMPSHLQGRYYLYIPVRFREQTGISDE--HTLFLKDPNNNLWETQLS-HSTKNRLLVSRGWKEFCLNNKLKLGDDCEFKFCSElKDNK 354
                       7899***************988887744..49***************6.55556899***********************776555443 PP
3B331.14.2e-10392473587
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       +++s+ l ++++ +p+ f+++ ++ +++  t+ l+d ++g    v l+++ + + ++  + Wk+F++  + kegD++ F+++++
  Zosma246g00310.1 392 TVTSYCLVQNNIAIPNAFVTATDLLHKN--TVELKDdTDGYICPVDLRHSTRNRVIFGNSSWKKFCSRYNFKEGDILAFQFESK 473
                       5789999999*********999888555..67777769999999999877777778889*********************8764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-1612107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1713109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-1515102No hitNo description
SMARTSM010198.1E-717105IPR003340B3 DNA binding domain
PfamPF023621.4E-826102IPR003340B3 DNA binding domain
PROSITE profilePS5086310.36252105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18262364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-19263363IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-15264363No hitNo description
SMARTSM010191.1E-9266365IPR003340B3 DNA binding domain
PROSITE profilePS5086314.283266365IPR003340B3 DNA binding domain
PfamPF023625.5E-13269354IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-11385487IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-12385474IPR015300DNA-binding pseudobarrel domain
CDDcd100177.51E-9387487No hitNo description
PROSITE profilePS5086310.405388490IPR003340B3 DNA binding domain
SMARTSM010190.0012389490IPR003340B3 DNA binding domain
PfamPF023621.3E-7392473IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSDMTGTRFN SHTKPMFFCI LKPDFLSKMD IPPAFIWNLI PEKIAKVWDS LGHSWLFKIR  60
GTHPNFYFDE GWKKFAKTFN LEVGYMLLFC YEGNMNFSVI IFGNNSCLKE YALEFIDKSK  120
KNTIERLYTR DDLDKSIDHK KIKLEAPNPS SLTEIHNAQF QQGCGNQRLE HLVKMPEKFI  180
ATTIVADNGS AFSLTLDSSS RTKEEQRHEH ACLPLKIPLC NHTDTDGTVL NTVQPYDHDD  240
EQQAAQASNT INDGSMICAE NAPPSYRITL MPSHLQGRYY LYIPVRFREQ TGISDEHTLF  300
LKDPNNNLWE TQLSHSTKNR LLVSRGWKEF CLNNKLKLGD DCEFKFCSEL KDNKKILQVE  360
IFKKPQRERL KAIKIKKTCG TNLSSTPSFW ITVTSYCLVQ NNIAIPNAFV TATDLLHKNT  420
VELKDDTDGY ICPVDLRHST RNRVIFGNSS WKKFCSRYNF KEGDILAFQF ESKSGSNGID  480
TFHFRILQEP PLQDEIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PGY80.0A0A0K9PGY8_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-18B3 family protein